RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 LDLRAD3Q86YD5 345 aa11.81□□□□□ -0.52
PTPN1-202ENST00000541713 LHFPL5Q8TAF8 219 aa11.81□□□□□ -0.52
PTPN1-202ENST00000541713 RHBDD1Q8TEB9 315 aa11.81□□□□□ -0.52
PTPN1-202ENST00000541713 AKR1E2Q96JD6 320 aa11.81□□□□□ -0.52
PTPN1-202ENST00000541713 H3BP45 60 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 ATXN7O15265 892 aaPredicted RBP11.8□□□□□ -0.52
PTPN1-202ENST00000541713 KLF7O75840 302 aaPredicted RBP11.8□□□□□ -0.52
PTPN1-202ENST00000541713 CLDN15P56746 228 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 GRB2P62993 217 aaKnown RBP11.8□□□□□ -0.52
PTPN1-202ENST00000541713 GGNBP1Q5YKI7 109 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 ZIC4Q8N9L1 334 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 OR10D3Q8NH80 312 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 IL1F10Q8WWZ1 152 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 ERGIC1Q969X5 290 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 HDGFL3Q9Y3E1 203 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 IGLV3-12A0A075B6K2 115 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 IGHV1-45A0A0A0MS14 117 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 TMEM218A2RU14 115 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 IFNA2P01563 188 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 GSTP1P09211 210 aaKnown RBP11.8□□□□□ -0.52
PTPN1-202ENST00000541713 COX6A1P12074 109 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 RPL12P30050 165 aaKnown RBP11.8□□□□□ -0.52
PTPN1-202ENST00000541713 SUMO3P55854 103 aaPredicted RBP11.8□□□□□ -0.52
PTPN1-202ENST00000541713 SMCO1Q147U7 214 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 STOML3Q8TAV4 291 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 CNTNAP3BQ96NU0 1288 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 EIF5A2Q9GZV4 153 aaKnown RBP11.8□□□□□ -0.52
PTPN1-202ENST00000541713 FBXL17Q9UF56 701 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 DMXL2Q8TDJ6 3036 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 PINLYPA6NC86 204 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 M0R036 132 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 HS3ST1O14792 307 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 SNRNP70P08621 437 aaKnown RBP11.8□□□□□ -0.52
PTPN1-202ENST00000541713 EIF1P41567 113 aaKnown RBP11.8□□□□□ -0.52
PTPN1-202ENST00000541713 NHLH2Q02577 135 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 OR4A4PQ8NGN8 299 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 ARL11Q969Q4 196 aa11.8□□□□□ -0.52
PTPN1-202ENST00000541713 GTF3C1Q12789 2109 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 H7C2Y5 167 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 NRASP01111 189 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 MUC1P15941 1255 aaPredicted RBP11.79□□□□□ -0.52
PTPN1-202ENST00000541713 SELEP16581 610 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 ZNF16P17020 682 aaPredicted RBP11.79□□□□□ -0.52
PTPN1-202ENST00000541713 ZNF385CQ66K41 422 aaPredicted RBP11.79□□□□□ -0.52
PTPN1-202ENST00000541713 Q6ZRG5 221 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 P4HA3Q7Z4N8 544 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 CALHM1Q8IU99 346 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 CD300LFQ8TDQ1 290 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 RTN4IP1Q8WWV3 396 aaPredicted RBP11.79□□□□□ -0.52
PTPN1-202ENST00000541713 FAM117AQ9C073 453 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 CHRNA10Q9GZZ6 450 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 LDAHQ9H6V9 325 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 IGKV1-12A0A0C4DH73 117 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 A0A1W2PNV4 684 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 IFNA21P01568 189 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 IGKV1D-12P01611 117 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 MELTFP08582 738 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 CD63P08962 238 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 OR8U9P0C7N5 309 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 TMEM33P57088 247 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 PSG4Q00888 419 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 TSC22D1Q15714 1073 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 OR8U1Q8NH10 309 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 RNF141Q8WVD5 230 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 RDH5Q92781 318 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 NAA11Q9BSU3 229 aaPredicted RBP11.79□□□□□ -0.52
PTPN1-202ENST00000541713 METTL9Q9H1A3 318 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 RHOFQ9HBH0 211 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 BARX1Q9HBU1 254 aaPredicted RBP11.79□□□□□ -0.52
PTPN1-202ENST00000541713 PROK2Q9HC23 129 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 DEPPQ9NTK1 212 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 CRIM1Q9NZV1 1036 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 FBXO7Q9Y3I1 522 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 ARHGAP21Q5T5U3 1957 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 C9JQL5 133 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 F8VVB4 439 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 F8VWA3 439 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 IL2RAP01589 272 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 ZNF728P0DKX0 622 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 GPM6AP51674 278 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 STARD6P59095 220 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 LPCAT3Q6P1A2 487 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 MRPL14Q6P1L8 145 aaKnown RBP11.79□□□□□ -0.52
PTPN1-202ENST00000541713 TFAP2EQ6VUC0 442 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 SKA3Q8IX90 412 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 C17orf78Q8N4C9 275 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 SH3BGRL3Q9H299 93 aa11.79□□□□□ -0.52
PTPN1-202ENST00000541713 DOCK11Q5JSL3 2073 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 C5orf49A4QMS7 147 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 TAS2R31P59538 309 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 FAM76BQ5HYJ3 339 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 NSUN5P2Q63ZY6 315 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 CCDC36Q8IYA8 594 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 OR52M1Q8NGK5 317 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 THOC3Q96J01 351 aaKnown RBP11.78□□□□□ -0.52
PTPN1-202ENST00000541713 C2orf50Q96LR7 162 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 SLC26A1Q9H2B4 701 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 CPAMD8Q8IZJ3 1885 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 DMXL1Q9Y485 3027 aa11.78□□□□□ -0.52
PTPN1-202ENST00000541713 HSD17B6O14756 317 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms