RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 SLC22A5O76082 557 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 VAMP1P23763 118 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 UBE2NP61088 152 aaKnown RBP12.49□□□□□ -0.41
CLIP1-216ENST00000541410 LGALSLQ3ZCW2 172 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-216ENST00000541410 ALKBH2Q6NS38 261 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 OSR2Q8N2R0 312 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 SPICQ8N5J4 248 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 OR10AD1Q8NGE0 317 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 EHFQ9NZC4 300 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 AK3Q9UIJ7 227 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 CADP27708 2225 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 PCNX1Q96RV3 2341 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 SHANK1Q9Y566 2161 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF732B4DXR9 585 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 BCL3P20749 454 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 OR3A3P47888 321 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 PER3P56645 1201 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 FAM189A2Q15884 450 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 ACSF3Q4G176 576 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-216ENST00000541410 FTMTQ8N4E7 242 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 NANOS1Q8WY41 292 aaKnown RBP12.49□□□□□ -0.41
CLIP1-216ENST00000541410 EMG1Q92979 244 aaKnown RBP12.49□□□□□ -0.41
CLIP1-216ENST00000541410 PRR13Q9NZ81 148 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 DKK4Q9UBT3 224 aa12.49□□□□□ -0.41
CLIP1-216ENST00000541410 DUSP1P28562 367 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF81P51508 661 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 RPUSD3Q6P087 351 aaKnown RBP12.48□□□□□ -0.41
CLIP1-216ENST00000541410 ZDHHC23Q8IYP9 409 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 CCDC107Q8WV48 283 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 CPNE2Q96FN4 548 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF488Q96MN9 340 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 OPN3Q9H1Y3 402 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-216ENST00000541410 SLC2A8Q9NY64 477 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 NOP16Q9Y3C1 178 aaKnown RBP12.48□□□□□ -0.41
CLIP1-216ENST00000541410 PQLC2LA1A4F0 135 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 SERPINE3A8MV23 424 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 HSPB6O14558 160 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 OR7C1O76099 320 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF14P17017 642 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-216ENST00000541410 CA6P23280 308 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 PLEKHN1Q494U1 663 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-216ENST00000541410 HOGA1Q86XE5 327 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 C12orf45Q8N5I9 185 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-216ENST00000541410 RBMXL3Q8N7X1 1067 aaKnown RBP12.48□□□□□ -0.41
CLIP1-216ENST00000541410 SCNM1Q9BWG6 230 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 TMPRSS13Q9BYE2 586 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 GP6Q9HCN6 339 aa12.48□□□□□ -0.41
CLIP1-216ENST00000541410 ICE1Q9Y2F5 2266 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 SYNGR1O43759 233 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 NAT1P18440 290 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 EIF2S3P41091 472 aaKnown RBP12.47□□□□□ -0.41
CLIP1-216ENST00000541410 TGFBR3Q03167 851 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 GUSBP1Q15486 140 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 GABRA6Q16445 453 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 ALKBH6Q3KRA9 238 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 CHRFAM7AQ494W8 412 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 ASCL4Q6XD76 172 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 Q6ZT83 130 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 SEM1Q6ZVN7 128 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 C5orf24Q7Z6I8 188 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 ZNF610Q8N9Z0 462 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 OR13G1Q8NGZ3 307 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 TERB2Q8NHR7 220 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 OR2J1Q9GZK6 312 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 ALX4Q9H161 411 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-216ENST00000541410 SLA2Q9H6Q3 261 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 PLSCR2Q9NRY7 297 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 ANAPC10Q9UM13 185 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 GIPP09681 153 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-216ENST00000541410 CHATP28329 748 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 GMFBP60983 142 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 IL13RA1P78552 427 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 DAZAP2Q15038 168 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-216ENST00000541410 TBC1D28Q2M2D7 210 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 KCTD9Q7L273 389 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 ZSCAN4Q8NAM6 433 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-216ENST00000541410 SEC22AQ96IW7 307 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 CMSS1Q9BQ75 279 aaKnown RBP12.47□□□□□ -0.41
CLIP1-216ENST00000541410 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLIP1-216ENST00000541410 GLRX2Q9NS18 164 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 OPN4Q9UHM6 478 aa12.47□□□□□ -0.41
CLIP1-216ENST00000541410 F5H5P2 479 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 OR2A4O95047 310 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 CD34P28906 385 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 RBMXP38159 391 aaKnown RBP12.46□□□□□ -0.41
CLIP1-216ENST00000541410 CEACAM21Q3KPI0 293 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 HAGHLQ6PII5 290 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-216ENST00000541410 SLC25A42Q86VD7 318 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 PXT1Q8NFP0 134 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 OR2A7Q96R45 310 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 C5orf66Q9H5L9 145 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 MTCH1Q9NZJ7 389 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 LHX6Q9UPM6 363 aa12.46□□□□□ -0.41
CLIP1-216ENST00000541410 FAM25EA8MYX2 175 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 H3BUI4 141 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 SELEP16581 610 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 ZBTB25P24278 435 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 RBM11P57052 281 aaKnown RBP12.45□□□□□ -0.42
CLIP1-216ENST00000541410 LY6G6FQ5SQ64 297 aa12.45□□□□□ -0.42
CLIP1-216ENST00000541410 IGFL3Q6UXB1 125 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms