RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PPA1Q15181 289 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 KISS1Q15726 138 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 DEFB113Q30KQ7 82 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 RFPL4BQ6ZWI9 263 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 TCTE3Q8IZS6 198 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 PNLDC1Q8NA58 520 aaKnown RBP10.25□□□□□ -0.77
CLIP1-208ENST00000537004 TMEM104Q8NE00 496 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 SEMA6DQ8NFY4 1073 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 OR4D10Q8NGI6 311 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 KCNG3Q8TAE7 436 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 AQP3Q92482 292 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 FOXC2Q99958 501 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 TMEM246Q9BRR3 403 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 OR10A4Q9H209 315 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 NOX3Q9HBY0 568 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 ING3Q9NXR8 418 aa10.25□□□□□ -0.77
CLIP1-208ENST00000537004 OR5H1A6NKK0 313 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 ARPC1BO15143 372 aaKnown RBP10.24□□□□□ -0.77
CLIP1-208ENST00000537004 CD3DP04234 171 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 M6PRP20645 277 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 ACKR3P25106 362 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 STOMP27105 288 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 VEGFCP49767 419 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 BSPH1Q075Z2 132 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 FCN2Q15485 313 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF260Q3ZCT1 412 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 CRIP3Q6Q6R5 217 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 Q6ZTK2 550 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 SPERTQ8NA61 448 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 CHST4Q8NCG5 386 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 CPEB3Q8NE35 698 aaKnown RBP10.24□□□□□ -0.77
CLIP1-208ENST00000537004 OR8S1Q8NH09 359 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 LILRB1Q8NHL6 650 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-208ENST00000537004 NICN1Q9BSH3 213 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 CXXC4Q9H2H0 198 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 BEX1Q9HBH7 125 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 MED13LQ71F56 2210 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 LOC105371267A0A1B0GV96 52 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 CDC14BO60729 498 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 NDUFB6O95139 128 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 MPIG6BO95866 241 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 UBBP0CG47 229 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 PTGFRP43088 359 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 GSK3AP49840 483 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 TAS2R19P59542 299 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 GABRA6Q16445 453 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 CDNFQ49AH0 187 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 TIMM23BQ5SRD1 257 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 NCMAPQ5T1S8 102 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 ADAM5Q6NVV9 412 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 STEAP1BQ6NZ63 245 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF782Q6ZMW2 699 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-208ENST00000537004 BEST4Q8NFU0 473 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 OR5D18Q8NGL1 313 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 OR10R2Q8NGX6 335 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 DVL3Q92997 716 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-208ENST00000537004 DACT3Q96B18 629 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-208ENST00000537004 MUCL1Q96DR8 90 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 NUDT16L1Q9BRJ7 211 aaKnown RBP10.24□□□□□ -0.77
CLIP1-208ENST00000537004 TMEM204Q9BSN7 226 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 TMEM59Q9BXS4 323 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 LPAR5Q9H1C0 372 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 RGCCQ9H4X1 137 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 BANF2Q9H503 90 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 ATPIF1Q9UII2 106 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF391Q9UJN7 358 aa10.24□□□□□ -0.77
CLIP1-208ENST00000537004 ICMTO60725 284 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 PRAF2O60831 178 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 HLA-HP01893 362 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 ALDH3B1P43353 468 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF83P51522 516 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 RIPPLY1Q0D2K3 151 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 MAB21L1Q13394 359 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 TNK1Q13470 666 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 RBMS2Q15434 407 aaKnown RBP10.23□□□□□ -0.77
CLIP1-208ENST00000537004 SLC22A6Q4U2R8 563 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 HIKESHIQ53FT3 197 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 CD276Q5ZPR3 534 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 NOXA1Q86UR1 476 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 TMEM229BQ8NBD8 167 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 WFDC11Q8NEX6 87 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 PIGTQ969N2 578 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 MBD6Q96DN6 1003 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 GPR173Q9NS66 373 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 B3GNT2Q9NY97 397 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 SLC25A15Q9Y619 301 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 PLCE1Q9P212 2302 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 A0A0A6YYD4 124 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 A0A1W2PP11 408 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 CRTAPO75718 401 aaPredicted RBP10.23□□□□□ -0.77
CLIP1-208ENST00000537004 CYB5AP00167 134 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 CHRM2P08172 466 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 MELTFP08582 738 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 NAT2P11245 290 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 GNB3P16520 340 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 PRSS12P56730 875 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 C1QL2Q7Z5L3 287 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 ZNF584Q8IVC4 421 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 WDR31Q8NA23 367 aa10.23□□□□□ -0.77
CLIP1-208ENST00000537004 OR11H7Q8NGC8 314 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms