RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ZNF485Q8NCK3 441 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 AMELYQ99218 206 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 GHITMQ9H3K2 345 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 MBTPS2O43462 519 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 HLA-DQB1P01920 261 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 CTSBP07858 339 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 RAB4AP20338 218 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 CA6P23280 308 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 OR1C1Q15619 314 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 OR6X1Q8NH79 312 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 ERGIC1Q969X5 290 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 ZFP64Q9NPA5 681 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 A0A1W2PPQ1 181 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 SOX15O60248 233 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 PDCD6O75340 191 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 VSIG8P0DPA2 414 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 NQO2P16083 231 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 IL11RAQ14626 422 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 PRSS54Q6PEW0 395 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 CLEC18BQ6UXF7 455 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 NUBPLQ8TB37 319 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 UCN2Q96RP3 112 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 NGBQ9NPG2 151 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 OCIAD1Q9NX40 245 aa11.23□□□□□ -0.61
USP53-209ENST00000514665 HSBP1L1C9JCN9 74 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 BGLAPP02818 100 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 GNG3P63215 75 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 SLC38A6Q8IZM9 456 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 SARAFQ96BY9 339 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 ADAT3Q96EY9 351 aaPredicted RBP11.22□□□□□ -0.61
USP53-209ENST00000514665 DECR2Q9NUI1 292 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 MYO16Q9Y6X6 1858 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 ZIC2O95409 532 aaPredicted RBP11.22□□□□□ -0.61
USP53-209ENST00000514665 IL2RAP01589 272 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 CRHP06850 196 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 ALKBH6Q3KRA9 238 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 ZNF718Q3SXZ3 478 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 C15orf54Q8N8G6 183 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 OR5C1Q8NGR4 320 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 SHARPINQ9H0F6 387 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 SSUH2Q9Y2M2 353 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 ADAM10O14672 748 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 ADAM20O43506 726 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 TMEM33P57088 247 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 SLC26A10Q8NG04 563 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 SP7Q8TDD2 431 aaPredicted RBP11.22□□□□□ -0.61
USP53-209ENST00000514665 MITD1Q8WV92 249 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 TM4SF19Q96DZ7 209 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 ADGRG7Q96K78 797 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 ADAM19Q9H013 955 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 RASL12Q9NYN1 266 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 NDRG3Q9UGV2 375 aa11.22□□□□□ -0.61
USP53-209ENST00000514665 SF3B6Q9Y3B4 125 aaKnown RBP11.22□□□□□ -0.61
USP53-209ENST00000514665 PARP14Q460N5 1801 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 TERTO14746 1132 aaKnown RBP11.21□□□□□ -0.61
USP53-209ENST00000514665 KIR3DL2P43630 455 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 NPBWR1P48145 328 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 UBE2G2P60604 165 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 PRDX4Q13162 271 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 UBALD2Q8IYN6 164 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 TPPP3Q9BW30 176 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 A0A1W2PQD3 144 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 PRSS44E7EML9 344 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 DHODHQ02127 395 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 INPP5JQ15735 1006 aaPredicted RBP11.21□□□□□ -0.61
USP53-209ENST00000514665 D2HGDHQ8N465 521 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 ZNF561Q8N587 486 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 WNT16Q9UBV4 365 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 TMED3Q9Y3Q3 217 aa11.21□□□□□ -0.61
USP53-209ENST00000514665 INTS1Q8N201 2190 aaKnown RBP11.21□□□□□ -0.61
USP53-209ENST00000514665 ARHGEF17Q96PE2 2063 aaPredicted RBP11.21□□□□□ -0.62
USP53-209ENST00000514665 SLC25A4P12235 298 aa11.21□□□□□ -0.62
USP53-209ENST00000514665 MMP16P51512 607 aa11.21□□□□□ -0.62
USP53-209ENST00000514665 POLR2GP62487 172 aaKnown RBP eCLIP11.21□□□□□ -0.62
USP53-209ENST00000514665 RBPJQ06330 500 aa11.21□□□□□ -0.62
USP53-209ENST00000514665 MICBQ29980 383 aa11.21□□□□□ -0.62
USP53-209ENST00000514665 JMJD6Q6NYC1 403 aaPredicted RBP11.21□□□□□ -0.62
USP53-209ENST00000514665 CD200R1LQ6Q8B3 271 aa11.21□□□□□ -0.62
USP53-209ENST00000514665 IP6K3Q96PC2 410 aa11.21□□□□□ -0.62
USP53-209ENST00000514665 FAM173AQ9BQD7 235 aa11.21□□□□□ -0.62
USP53-209ENST00000514665 ACTR3CQ9C0K3 210 aaPredicted RBP11.21□□□□□ -0.62
USP53-209ENST00000514665 KCNIP2Q9NS61 270 aa11.21□□□□□ -0.62
USP53-209ENST00000514665 ANXA10Q9UJ72 324 aa11.21□□□□□ -0.62
USP53-209ENST00000514665 IFITM2Q01629 132 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 SLC22A18ASQ8N1D0 253 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 FAM24BQ8N5W8 94 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 GALMQ96C23 342 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 WSB1Q9Y6I7 421 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 KIF26BQ2KJY2 2108 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 TRGV5A0A0B4J1U4 118 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 UBE2L5PA0A1B0GUS4 154 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 KCNAB3O43448 404 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 POU2F2P09086 479 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 COX5AP20674 150 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 HABP2Q14520 560 aaPredicted RBP11.2□□□□□ -0.62
USP53-209ENST00000514665 GAB4Q2WGN9 574 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 UQCC3Q6UW78 93 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 ZNF705AQ6ZN79 300 aaPredicted RBP11.2□□□□□ -0.62
USP53-209ENST00000514665 OR2C3Q8N628 320 aa11.2□□□□□ -0.62
USP53-209ENST00000514665 OR10V1Q8NGI7 309 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms