RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SOSTQ9BQB4 213 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 ALX4Q9H161 411 aaPredicted RBP14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 SPTBN1Q01082 2364 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 GPX8Q8TED1 209 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 OR51M1Q9H341 326 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 TMEM9BQ9NQ34 198 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 KCNE5Q9UJ90 142 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 TRAPPC2LQ9UL33 140 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 WSB1Q9Y6I7 421 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 A0A1B0GTQ1 180 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 WDR74Q6RFH5 385 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 SLC25A42Q86VD7 318 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 POM121Q96HA1 1249 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 ZMIZ1Q9ULJ6 1067 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 LAMP3Q9UQV4 416 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 MED12Q93074 2177 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 SEC14L6B5MCN3 397 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 ELLP55199 621 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 HTD2P86397 168 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 OR2B11Q5JQS5 317 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 SLC38A9Q8NBW4 561 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 OR51A2Q8NGJ7 313 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 ZPLD1Q8TCW7 415 aa14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 GNPNAT1Q96EK6 184 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 COLQQ9Y215 455 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-209ENST00000494080 C5orf49A4QMS7 147 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 SSSCA1O60232 199 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 RNF151Q2KHN1 245 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 ZNF528Q3MIS6 628 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 WDR5BQ86VZ2 330 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 OR51F2Q8NH61 342 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 INTS12Q96CB8 462 aaKnown RBP14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 VWA8A3KMH1 1905 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 SLC25A4P12235 298 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 CASP6P55212 293 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 CLN3Q13286 438 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 TMEM268Q5VZI3 342 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 PIPOXQ9P0Z9 390 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 ICAM5Q9UMF0 924 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 A0A1W2PPQ1 181 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 MFNGO00587 321 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 ANGPTL7O43827 346 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 CST7O76096 145 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 GABRA2P47869 451 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 TAS2R30P59541 319 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 RPUSD4Q96CM3 377 aaKnown RBP14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 MUCL1Q96DR8 90 aa14.46□□□□□ -0.09
CCDC88B-209ENST00000494080 A0A1W2PPV4 95 aa14.46□□□□□ -0.1
CCDC88B-209ENST00000494080 FPR2P25090 351 aa14.46□□□□□ -0.1
CCDC88B-209ENST00000494080 HFEQ30201 348 aa14.46□□□□□ -0.1
CCDC88B-209ENST00000494080 ACER2Q5QJU3 275 aa14.46□□□□□ -0.1
CCDC88B-209ENST00000494080 LSRQ86X29 649 aaPredicted RBP14.46□□□□□ -0.1
CCDC88B-209ENST00000494080 TMEM18Q96B42 140 aa14.46□□□□□ -0.1
CCDC88B-209ENST00000494080 GRPP07492 148 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 PRSS12P56730 875 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 PPP1R35Q8TAP8 253 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 TMEM74BQ9NUR3 256 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 KLF13Q9Y2Y9 288 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 IGHV5-10-1A0A0J9YXX1 117 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 TIMM8AO60220 97 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 NXPH2O95156 264 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 LTBRP36941 435 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 HBG1P69891 147 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 HBG2P69892 147 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 CLEC18BQ6UXF7 455 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 ADAD2Q8NCV1 583 aaKnown RBP14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 ABHD5Q8WTS1 349 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 GSN-AS1Q9NRJ2 163 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 LHX6Q9UPM6 363 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 POMT1Q9Y6A1 747 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 MGAMO43451 1857 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 OR2M5A3KFT3 312 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 PIN1P1O15428 100 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 TGOLN2O43493 480 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 ADRA2CP18825 462 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 BAGE3Q86Y29 109 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 BAGE2Q86Y30 109 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 SLC25A45Q8N413 288 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 OR2V1Q8NHB1 315 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 ARHGAP5-AS1Q96IT6 56 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 TAAR9Q96RI9 348 aa14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 DUSP15Q9H1R2 295 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-209ENST00000494080 NRASP01111 189 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 JMJD6Q6NYC1 403 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 THNSL2Q86YJ6 484 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 CNTD2Q9H8S5 307 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 BCO1Q9HAY6 547 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 ANKRD36A6QL64 1941 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 GPR37O15354 613 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 EFSO43281 561 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 TBX6O95947 436 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 HLA-HP01893 362 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 ZNF133P52736 654 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 MOGAT2Q3SYC2 334 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 OR52N4Q8NGI2 321 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 REEP6Q96HR9 211 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 SMIM7Q9BQ49 75 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 VSIG4Q9Y279 399 aa14.44□□□□□ -0.1
CCDC88B-209ENST00000494080 PDGFBP01127 241 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms