RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 THBS3P49746 956 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 OR12D2P58182 307 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 ACTA2P62736 377 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 ACTG2P63267 376 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 ACTC1P68032 377 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 ACTA1P68133 377 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 DYNC1I2Q13409 638 aaKnown RBP12.2□□□□□ -0.46
MCF2L-228ENST00000487354 ABCA11PQ4W5N1 156 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 SAMD4BQ5PRF9 694 aaKnown RBP12.2□□□□□ -0.46
MCF2L-228ENST00000487354 BAIAP2L2Q6UXY1 529 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 C16orf82Q7Z2V1 217 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.2□□□□□ -0.46
MCF2L-228ENST00000487354 OR4X2Q8NGF9 303 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 NSMCE2Q96MF7 247 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 TEAD3Q99594 435 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 NIPSNAP1Q9BPW8 284 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 CCDC134Q9H6E4 229 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 LIN7BQ9HAP6 207 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 GPR84Q9NQS5 396 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 LSM4Q9Y4Z0 139 aaKnown RBP12.2□□□□□ -0.46
MCF2L-228ENST00000487354 KIAA2026Q5HYC2 2103 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 CSMD3Q7Z407 3707 aa12.2□□□□□ -0.46
MCF2L-228ENST00000487354 TMEM82A0PJX8 343 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 CCDC22O60826 627 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 NXPH2O95156 264 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 ALOX5APP20292 161 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 HCCSP53701 268 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 RIPPLY1Q0D2K3 151 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 KHDC1LQ5JSQ8 128 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 HDXQ7Z353 690 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 OR51E1Q8TCB6 317 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 ZNF714Q96N38 554 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 OR51V1Q9H2C8 321 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 SLC22A13Q9Y226 551 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 PIGLQ9Y2B2 252 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 SESN1Q9Y6P5 492 aa12.19□□□□□ -0.46
MCF2L-228ENST00000487354 C3orf84H3BNL1 204 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 PSMD9O00233 223 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 GMNNO75496 209 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 NRASP01111 189 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 NHLRC4P0CG21 123 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-228ENST00000487354 ATP6V1B1P15313 513 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 ATP6V1B2P21281 511 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 SLC2A5P22732 501 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 EDDM3BP56851 147 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 MFGE8Q08431 387 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-228ENST00000487354 PLBD1Q6P4A8 553 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 ASCC1Q8N9N2 400 aaKnown RBP12.18□□□□□ -0.46
MCF2L-228ENST00000487354 BBS1Q8NFJ9 593 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 P2RX4Q99571 388 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 SLC25A33Q9BSK2 321 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 CHID1Q9BWS9 393 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 GPR61Q9BZJ8 451 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 PBOV1Q9GZY1 135 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 TMEM133Q9H2Q1 129 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 GPR173Q9NS66 373 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 ENPP5Q9UJA9 477 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 HHLA2Q9UM44 414 aa12.18□□□□□ -0.46
MCF2L-228ENST00000487354 ACOD1A6NK06 481 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 SRSF10O75494 262 aaKnown RBP12.17□□□□□ -0.46
MCF2L-228ENST00000487354 DHRS3O75911 302 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 OR2F2O95006 317 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 CLIC3O95833 236 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 TTRP02766 147 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 RPL23AP62750 156 aaKnown RBP12.17□□□□□ -0.46
MCF2L-228ENST00000487354 MICAQ29983 383 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 ZNF684Q5T5D7 378 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 CD300LDQ6UXZ3 194 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 ZNF573Q86YE8 665 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 OR8H2Q8N162 312 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 OSR2Q8N2R0 312 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 ZNF676Q8N7Q3 588 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 TPRX1Q8N7U7 411 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 NDNFQ8TB73 568 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 BCAS4Q8TDM0 211 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 DPF1Q92782 380 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 ITFG2Q969R8 447 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 OTULINQ96BN8 352 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 RBM14Q96PK6 669 aaKnown RBP12.17□□□□□ -0.46
MCF2L-228ENST00000487354 ZNF649Q9BS31 505 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 CLEC7AQ9BXN2 247 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 NUFIP1Q9UHK0 495 aaKnown RBP12.17□□□□□ -0.46
MCF2L-228ENST00000487354 POLDIP2Q9Y2S7 368 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 U3KQV3 271 aa12.17□□□□□ -0.46
MCF2L-228ENST00000487354 TMEM269A0A1B0GVZ9 245 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 TCRBV5S2A0A599 114 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 PRDX6P30041 224 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 MEF2CQ06413 473 aaPredicted RBP12.16□□□□□ -0.46
MCF2L-228ENST00000487354 DCTN2Q13561 401 aaKnown RBP12.16□□□□□ -0.46
MCF2L-228ENST00000487354 Q6ZSR3 168 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 C8orf86Q6ZUL3 223 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 KRT77Q7Z794 578 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 ANGPTL5Q86XS5 388 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 OR52N4Q8NGI2 321 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 CMTM5Q96DZ9 223 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 GAR1Q9NY12 217 aaKnown RBP12.16□□□□□ -0.46
MCF2L-228ENST00000487354 MTCH1Q9NZJ7 389 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.16□□□□□ -0.46
MCF2L-228ENST00000487354 IL36RNQ9UBH0 155 aa12.16□□□□□ -0.46
MCF2L-228ENST00000487354 DNAJB9Q9UBS3 223 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms