RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 NMNAT1Q9HAN9 279 aaPredicted RBP6.15□□□□□ -1.42
USP54-211ENST00000474929 GNB4Q9HAV0 340 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 THAP1Q9NVV9 213 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 ARGLU1Q9NWB6 273 aaPredicted RBP6.15□□□□□ -1.42
USP54-211ENST00000474929 VSX1Q9NZR4 365 aaPredicted RBP6.15□□□□□ -1.42
USP54-211ENST00000474929 SIGLEC7Q9Y286 467 aa6.15□□□□□ -1.42
USP54-211ENST00000474929 C16orf90A8MZG2 172 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 XRCC3O43542 346 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 MPZL2O60487 215 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 RGS11O94810 467 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 IGLV1-47P01700 117 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 APOC1P02654 83 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 IGF1P05019 195 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 NOS3P29474 1203 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 PRDX2P32119 198 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 DCTDP32321 178 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 GLIPR1P48060 266 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 SLC18A1P54219 525 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 PRRX1P54821 245 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 SLURP1P55000 103 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 TAS2R41P59536 307 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 ZNF45Q02386 682 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 HLA-DRB5Q30154 266 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 SLC16A9Q7RTY1 509 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 CATSPERDQ86XM0 798 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 LRRC75AQ8NAA5 344 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 SMYD1Q8NB12 490 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 OR2K2Q8NGT1 345 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 FBLIM1Q8WUP2 373 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 ATP6V1G3Q96LB4 118 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 C18orf15Q96N68 181 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 GAL3ST2Q9H3Q3 398 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 RGCCQ9H4X1 137 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 VIPAS39Q9H9C1 493 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 SLC2A8Q9NY64 477 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 ENPP5Q9UJA9 477 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 TP53TG1Q9Y2A0 90 aa6.14□□□□□ -1.43
USP54-211ENST00000474929 A0A0J9YWU9 116 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 hCG_38984A0A1B0GV85 526 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 BUB1B-PAK6H3BSN5 160 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 K7N7A8 449 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 TOR1AO14656 332 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 IFNA4P05014 189 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 TROVE2P10155 538 aaKnown RBP eCLIP6.13□□□□□ -1.43
USP54-211ENST00000474929 H2AFXP16104 143 aaPredicted RBP6.13□□□□□ -1.43
USP54-211ENST00000474929 CD34P28906 385 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 AQP1P29972 269 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 BMI1P35226 326 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 RAB7AP51149 207 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 GNG3P63215 75 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 FAM3AP98173 230 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 GTDC1Q4AE62 458 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 FGD3Q5JSP0 725 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 LCN1P1Q5VSP4 162 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 MAVSQ7Z434 540 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 LYG2Q86SG7 212 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 NAA40Q86UY6 237 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 OR8H3Q8N146 312 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 ASCC1Q8N9N2 400 aaKnown RBP6.13□□□□□ -1.43
USP54-211ENST00000474929 POC1AQ8NBT0 407 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 OR52L1Q8NGH7 329 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 OR56B4Q8NH76 319 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 DYDC1Q8WWB3 177 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 OR5P3Q8WZ94 311 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 RNF170Q96K19 258 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 Q96M85 177 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 KCTD7Q96MP8 289 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 THAP7Q9BT49 309 aaPredicted RBP6.13□□□□□ -1.43
USP54-211ENST00000474929 COPS4Q9BT78 406 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 BARHL1Q9BZE3 327 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 NUAK2Q9H093 628 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 PLEKHA3Q9HB20 300 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 PNRC2Q9NPJ4 139 aaKnown RBP6.13□□□□□ -1.43
USP54-211ENST00000474929 CYB5R1Q9UHQ9 305 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 POLDIP2Q9Y2S7 368 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 COMMD3-BMI1R4GMX3 469 aa6.13□□□□□ -1.43
USP54-211ENST00000474929 TRAV27A0A087WT01 109 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 OR5B21A6NL26 309 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 TRPC5OSA6NMA1 111 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 ZNF850A8MQ14 1090 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 EPM2AB3EWF7 344 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 SDHDO14521 159 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 SNNO75324 88 aaPredicted RBP6.12□□□□□ -1.43
USP54-211ENST00000474929 CST4P01036 141 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 LGALS1P09382 135 aaKnown RBP6.12□□□□□ -1.43
USP54-211ENST00000474929 INAFM2P0DMQ5 153 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 IFI30P13284 250 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 IDO1P14902 403 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 ANOS1P23352 680 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 IL12AP29459 219 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 GPR4P46093 362 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 CD81P60033 236 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 PRDX4Q13162 271 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 EIF2B1Q14232 305 aaKnown RBP6.12□□□□□ -1.43
USP54-211ENST00000474929 MEP1BQ16820 701 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 DUSP7Q16829 419 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 FAM122BQ7Z309 247 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 LINC00346Q8IVM7 164 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 ZDHHC21Q8IVQ6 265 aa6.12□□□□□ -1.43
USP54-211ENST00000474929 NKAIN4Q8IVV8 208 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 490 ms