RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IGHV1-69DA0A0B4J2H0 117 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 A0A1B0GVI7 797 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 FAM183AA6NL82 134 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 ANXA2P2A6NMY6 339 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 CDIPTO14735 213 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 FCN3O75636 299 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 NDUFA7O95182 113 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 CST1P01037 141 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 IGHV1-69P01742 117 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 LYNP07948 512 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 H2BFMP0C1H6 154 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 HOXB6P17509 224 aaKnown RBP5.95□□□□□ -1.46
USP54-208ENST00000461520 PAICSP22234 425 aaKnown RBP5.95□□□□□ -1.46
USP54-208ENST00000461520 CALB2P22676 271 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 OMGP23515 440 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 OPRL1P41146 370 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 RAG2P55895 527 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 IL5RAQ01344 420 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 MS4A2Q01362 244 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 CFHR3Q02985 330 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 KLHL12Q53G59 568 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 WDR38Q5JTN6 314 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 ATPAF1Q5TC12 328 aaPredicted RBP5.95□□□□□ -1.46
USP54-208ENST00000461520 OLFML2AQ68BL7 652 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 WDR82Q6UXN9 313 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 C17orf107Q6ZR85 190 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 FAM57BQ71RH2 274 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.95□□□□□ -1.46
USP54-208ENST00000461520 TIGD4Q8IY51 512 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 KIR3DL3Q8N743 410 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 LY6G5BQ8NDX9 201 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 OR10Z1Q8NGY1 313 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 GIPC3Q8TF64 312 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 NPRL2Q8WTW4 380 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 LRRC29Q8WV35 223 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 LRTOMTQ8WZ04 291 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 ST8SIA4Q92187 359 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 DYRK2Q92630 601 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 TAF15Q92804 592 aaKnown RBP eCLIP5.95□□□□□ -1.46
USP54-208ENST00000461520 LHX4Q969G2 390 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 OTULINQ96BN8 352 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 PGAM5Q96HS1 289 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 FEVQ99581 238 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 MICU1Q9BPX6 476 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 RTL8AQ9BWD3 113 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 PAPOLGQ9BWT3 736 aaKnown RBP5.95□□□□□ -1.46
USP54-208ENST00000461520 CHIAQ9BZP6 476 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 DNTTIP1Q9H147 329 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 MED20Q9H944 212 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 GAR1Q9NY12 217 aaKnown RBP5.95□□□□□ -1.46
USP54-208ENST00000461520 C1RLQ9NZP8 487 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 DNAJC27Q9NZQ0 273 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 ZNF319Q9P2F9 582 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 NKX1-2Q9UD57 310 aaPredicted RBP5.95□□□□□ -1.46
USP54-208ENST00000461520 RPUSD1Q9UJJ7 312 aaKnown RBP5.95□□□□□ -1.46
USP54-208ENST00000461520 ZNF391Q9UJN7 358 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 RHBDD3Q9Y3P4 386 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 MPC1Q9Y5U8 109 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 VWFP04275 2813 aa5.95□□□□□ -1.46
USP54-208ENST00000461520 IGHV3OR15-7A0A075B7D8 119 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 A0A0G2JK05 382 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 A0A1B0GW55 424 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 CLPSL1A2RUU4 121 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 TMEM210A6NLX4 147 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 AQP12BA6NM10 295 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 PRR23D1E9PI22 279 aaPredicted RBP5.94□□□□□ -1.46
USP54-208ENST00000461520 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.94□□□□□ -1.46
USP54-208ENST00000461520 GNGT2O14610 69 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 NDUFB3O43676 98 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 CST4P01036 141 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 HMGN1P05114 100 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 DUX4L2P0CJ85 424 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 DUX4L3P0CJ86 424 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 DUX4L4P0CJ87 422 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 DUX4L5P0CJ88 424 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 DUX4L6P0CJ89 424 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 DUX4L7P0CJ90 424 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 PRR23D2P0DMB1 279 aaPredicted RBP5.94□□□□□ -1.46
USP54-208ENST00000461520 BTF3P20290 206 aaKnown RBP5.94□□□□□ -1.46
USP54-208ENST00000461520 IER3P46695 156 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 TGM4P49221 684 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 LINC00205P59089 165 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 CSNK2BP67870 215 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 GFOD2Q3B7J2 385 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 LRRC10Q5BKY1 277 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 FAM76BQ5HYJ3 339 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 SLC35D3Q5M8T2 416 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 STUMQ69YW2 141 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 DUX4L9Q6RFH8 374 aaPredicted RBP5.94□□□□□ -1.46
USP54-208ENST00000461520 METAP1DQ6UB28 335 aaPredicted RBP5.94□□□□□ -1.46
USP54-208ENST00000461520 KRT74Q7RTS7 529 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 VMO1Q7Z5L0 202 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 AQP12AQ8IXF9 295 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 IQCF1Q8N6M8 205 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 SCCPDHQ8NBX0 429 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 OTOSQ8NHW6 89 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 THEM6Q8WUY1 208 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 ITFG2Q969R8 447 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 HIST1H2AAQ96QV6 131 aa5.94□□□□□ -1.46
USP54-208ENST00000461520 CCT8L2Q96SF2 557 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms