RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 FDX2Q6P4F2 183 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 SLC23A3Q6PIS1 610 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 LILRB2Q8N423 598 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 UBALD1Q8TB05 177 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 CPNE4Q96A23 557 aaPredicted RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 TRAF4Q9BUZ4 470 aaPredicted RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 MAGT1Q9H0U3 335 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 LPAR5Q9H1C0 372 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 FAM206AQ9NX38 181 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 ZNF629Q9UEG4 869 aaPredicted RBP10.23□□□□□ -0.77
NPHP4-204ENST00000460696 HS3ST3B1Q9Y662 390 aa10.23□□□□□ -0.77
NPHP4-204ENST00000460696 TICRRQ7Z2Z1 1910 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 ATP6V1G2-DDX39BF2Z307 99 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 EFSO43281 561 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 SFT2D2O95562 160 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 FAM157BP0CG42 384 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 C1QTNF12Q5T7M4 302 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 TSPO2Q5TGU0 170 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 OR56B2PQ8NGI1 322 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 OR6S1Q8NH40 331 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 PARD6AQ9NPB6 346 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 NPDC1Q9NQX5 325 aaPredicted RBP10.22□□□□□ -0.77
NPHP4-204ENST00000460696 PKDREJQ9NTG1 2253 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 ZNF816-ZNF321PA0A0X1KG74 233 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 ATXN7O15265 892 aaPredicted RBP10.22□□□□□ -0.77
NPHP4-204ENST00000460696 NME2P1O60361 137 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 ECI1P42126 302 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 GPM6AP51674 278 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 RAB1AP62820 205 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 SLC10A1Q14973 349 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 C1orf100Q5SVJ3 147 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 TFAP2EQ6VUC0 442 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 OR5M9Q8NGP3 310 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 KIF26AQ9ULI4 1882 aaPredicted RBP10.22□□□□□ -0.77
NPHP4-204ENST00000460696 ZNF732B4DXR9 585 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 SIGLEC5O15389 551 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 NXPH2O95156 264 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 ISG15P05161 165 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 CRHP06850 196 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 GP1BAP07359 652 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 IL2RGP31785 369 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 PPIAP62937 165 aaKnown RBP10.22□□□□□ -0.77
NPHP4-204ENST00000460696 DPPA2Q7Z7J5 298 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 OR1S2Q8NGQ3 325 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 FBXW5Q969U6 566 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 PECRQ9BY49 303 aa10.22□□□□□ -0.77
NPHP4-204ENST00000460696 NKX6-2Q9C056 277 aaPredicted RBP10.22□□□□□ -0.77
NPHP4-204ENST00000460696 NPIPB7O75200 414 aa10.21□□□□□ -0.77
NPHP4-204ENST00000460696 RAC2P15153 192 aa10.21□□□□□ -0.77
NPHP4-204ENST00000460696 OR1C1Q15619 314 aa10.21□□□□□ -0.77
NPHP4-204ENST00000460696 Q6ZRG5 221 aa10.21□□□□□ -0.77
NPHP4-204ENST00000460696 TMPRSS7Q7RTY8 843 aa10.21□□□□□ -0.77
NPHP4-204ENST00000460696 ASB13Q8WXK3 278 aa10.21□□□□□ -0.77
NPHP4-204ENST00000460696 ZCCHC14Q8WYQ9 949 aaKnown RBP10.21□□□□□ -0.77
NPHP4-204ENST00000460696 SLC39A7Q92504 469 aa10.21□□□□□ -0.77
NPHP4-204ENST00000460696 DYRK2Q92630 601 aa10.21□□□□□ -0.77
NPHP4-204ENST00000460696 ESPL1Q14674 2120 aa10.21□□□□□ -0.77
NPHP4-204ENST00000460696 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.21□□□□□ -0.78
NPHP4-204ENST00000460696 ADAM10O14672 748 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 NMBP08949 121 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 KLK2P20151 261 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 HOXD11P31277 338 aaPredicted RBP10.21□□□□□ -0.78
NPHP4-204ENST00000460696 ASCL1P50553 236 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 FUT6P51993 359 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 RBM39Q14498 530 aaKnown RBP10.21□□□□□ -0.78
NPHP4-204ENST00000460696 TUSC1Q2TAM9 212 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 CLEC9AQ6UXN8 241 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 MITD1Q8WV92 249 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 C20orf24Q9BUV8 137 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 CNTNAP3Q9BZ76 1288 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 ALX4Q9H161 411 aaPredicted RBP10.21□□□□□ -0.78
NPHP4-204ENST00000460696 WASF3Q9UPY6 502 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 PUS1Q9Y606 427 aaKnown RBP eCLIP10.21□□□□□ -0.78
NPHP4-204ENST00000460696 MKRN2OSH3BPM6 223 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 MSTNO14793 375 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 CLPSP04118 112 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 NKX2-1P43699 371 aaPredicted RBP10.21□□□□□ -0.78
NPHP4-204ENST00000460696 PEA15Q15121 130 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 C3AR1Q16581 482 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 ATP1A1-AS1Q5TC04 95 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 CT55Q8WUE5 264 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 TAAR9Q96RI9 348 aa10.21□□□□□ -0.78
NPHP4-204ENST00000460696 A0A1W2PR80 420 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 GEMIN2O14893 280 aaKnown RBP10.2□□□□□ -0.78
NPHP4-204ENST00000460696 SERPINA7P05543 415 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 RAB5BP61020 215 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 SLC25A47Q6Q0C1 308 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF709Q8N972 641 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 M1APQ8TC57 530 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF524Q96C55 264 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 HINT2Q9BX68 163 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 FAM117AQ9C073 453 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF407Q9C0G0 2248 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 WISP1O95388 367 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 FUT3P21217 361 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 ZP3P21754 424 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 GCH1P30793 250 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF529Q6P280 563 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 WDSUB1Q8N9V3 476 aa10.2□□□□□ -0.78
NPHP4-204ENST00000460696 HAS2Q92819 552 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms