RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ZNF561Q8N587 486 aa16.93■□□□□ 0.3
SDC1-205ENST00000447124 OR4M1Q8NGD0 313 aa16.93■□□□□ 0.3
SDC1-205ENST00000447124 TRMT10AQ8TBZ6 339 aaKnown RBP16.93■□□□□ 0.3
SDC1-205ENST00000447124 CITED1Q99966 193 aa16.93■□□□□ 0.3
SDC1-205ENST00000447124 RBM4BQ9BQ04 359 aaKnown RBP16.93■□□□□ 0.3
SDC1-205ENST00000447124 RNF114Q9Y508 228 aa16.93■□□□□ 0.3
SDC1-205ENST00000447124 FAM230AA0A1W2PPH8 454 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 ANKRD61A6NGH8 418 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 H0YAE9 185 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 H3BNX3 289 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 SYT7O43581 403 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 NXPH2O95156 264 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 KIR3DL2P43630 455 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 ACSM1Q08AH1 577 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 TMED1Q13445 227 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 BLMHQ13867 455 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 TP53I3Q53FA7 332 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 PKIBQ9C010 78 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 MTCH1Q9NZJ7 389 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 OR14J1Q9UGF5 321 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 POLDIP2Q9Y2S7 368 aa16.92■□□□□ 0.3
SDC1-205ENST00000447124 SF3B6Q9Y3B4 125 aaKnown RBP16.92■□□□□ 0.3
SDC1-205ENST00000447124 ENTPD6O75354 484 aa16.91■□□□□ 0.3
SDC1-205ENST00000447124 CLPXO76031 633 aa16.91■□□□□ 0.3
SDC1-205ENST00000447124 ATP6V1E1P36543 226 aa16.91■□□□□ 0.3
SDC1-205ENST00000447124 PROK1P58294 105 aa16.91■□□□□ 0.3
SDC1-205ENST00000447124 RPL31P62899 125 aaKnown RBP16.91■□□□□ 0.3
SDC1-205ENST00000447124 IL24Q13007 206 aa16.91■□□□□ 0.3
SDC1-205ENST00000447124 GDPGP1Q6ZNW5 385 aa16.91■□□□□ 0.3
SDC1-205ENST00000447124 C17orf107Q6ZR85 190 aa16.91■□□□□ 0.3
SDC1-205ENST00000447124 OR5D13Q8NGL4 314 aa16.91■□□□□ 0.3
SDC1-205ENST00000447124 VPREB3Q9UKI3 123 aa16.91■□□□□ 0.3
SDC1-205ENST00000447124 J3QRE1 110 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 SLC1A7O00341 560 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 KCNAB3O43448 404 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 TK1P04183 234 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 ALPLP05186 524 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 CCL3L1P16619 93 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 PAX6P26367 422 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 ZNF273Q14593 569 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 ZIK1Q3SY52 487 aaPredicted RBP16.9■□□□□ 0.3
SDC1-205ENST00000447124 BEND2Q8NDZ0 799 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 TRUB1Q8WWH5 349 aaKnown RBP16.9■□□□□ 0.3
SDC1-205ENST00000447124 HRASLS5Q96KN8 279 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 C16orf95Q9H693 158 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 AASSQ9UDR5 926 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 SLC7A11Q9UPY5 501 aa16.9■□□□□ 0.3
SDC1-205ENST00000447124 VWFP04275 2813 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 ANGPTL7O43827 346 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 TSPAN9O75954 239 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 INMTO95050 263 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 PAHP00439 452 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 FUT6P51993 359 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 CDC42P60953 191 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 KPNB1Q14974 876 aaKnown RBP16.89■□□□□ 0.29
SDC1-205ENST00000447124 SLC25A30Q5SVS4 291 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 RFKQ969G6 155 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 ADI1Q9BV57 179 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 MEGF9Q9H1U4 602 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 USE1Q9NZ43 259 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 GNG8Q9UK08 70 aa16.89■□□□□ 0.29
SDC1-205ENST00000447124 K7N7A8 449 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 EI24O14681 340 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 ZNF737O75373 536 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 DLX6P56179 175 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 COL10A1Q03692 680 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 MIDNQ504T8 468 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 ASPHD2Q6ICH7 369 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 BRICD5Q6PL45 260 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 CCDC54Q8NEL0 328 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 OR2G2Q8NGZ5 317 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 ADAT3Q96EY9 351 aaPredicted RBP16.88■□□□□ 0.29
SDC1-205ENST00000447124 SSX3Q99909 188 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 CHST5Q9GZS9 411 aa16.88■□□□□ 0.29
SDC1-205ENST00000447124 IGKV1-9A0A0C4DH69 117 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 LOC107986453A0A1B0GWG9 222 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 BTBD17A6NE02 478 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 H3BUX3 64 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 OR12D2P58182 307 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 NANOS3P60323 173 aaKnown RBP16.87■□□□□ 0.29
SDC1-205ENST00000447124 SNRPGP62308 76 aaKnown RBP16.87■□□□□ 0.29
SDC1-205ENST00000447124 OCLNQ16625 522 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 DHRS7BQ6IAN0 325 aaPredicted RBP16.87■□□□□ 0.29
SDC1-205ENST00000447124 OR5R1Q8NH85 324 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 SLAMF9Q96A28 289 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 RNFT2Q96EX2 444 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 CEP19Q96LK0 163 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 FAM234AQ9H0X4 552 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 HEXA-AS1Q9H8Q6 139 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 PLEKHA1Q9HB21 404 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 FRRS1LQ9P0K9 344 aa16.87■□□□□ 0.29
SDC1-205ENST00000447124 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.87■□□□□ 0.29
SDC1-205ENST00000447124 TMEM82A0PJX8 343 aa16.86■□□□□ 0.29
SDC1-205ENST00000447124 MEX3AA1L020 520 aaKnown RBP16.86■□□□□ 0.29
SDC1-205ENST00000447124 MEGF11A6BM72 1044 aa16.86■□□□□ 0.29
SDC1-205ENST00000447124 C17orf98A8MV24 154 aa16.86■□□□□ 0.29
SDC1-205ENST00000447124 GATBO75879 557 aaKnown RBP16.86■□□□□ 0.29
SDC1-205ENST00000447124 CHRM2P08172 466 aa16.86■□□□□ 0.29
SDC1-205ENST00000447124 PIPP12273 146 aaPredicted RBP16.86■□□□□ 0.29
SDC1-205ENST00000447124 TGFBR2P37173 567 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms