RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OPN1MW2P0DN77 364 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 OPN1MW3P0DN78 364 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 T-ENOLP0DO92 83 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 CRISP1P54107 249 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 DYNC1I2Q13409 638 aaKnown RBP11.77□□□□□ -0.53
SDC1-204ENST00000429035 HABP2Q14520 560 aaPredicted RBP11.77□□□□□ -0.53
SDC1-204ENST00000429035 TMEM219Q86XT9 240 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 AJUBAQ96IF1 538 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 TBX5Q99593 518 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 H2AFY2Q9P0M6 372 aaPredicted RBP11.77□□□□□ -0.53
SDC1-204ENST00000429035 DNAJB9Q9UBS3 223 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 OR52A1Q9UKL2 312 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 R4GMQ9 66 aa11.77□□□□□ -0.53
SDC1-204ENST00000429035 FAM230AA0A1W2PPH8 454 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 ZNF670-ZNF695F2Z2N8 137 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 TK1P04183 234 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 ROM1Q03395 351 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 COL10A1Q03692 680 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 EDDM3AQ14507 147 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 BEAN1Q3B7T3 259 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 LIAT1Q6ZQX7 453 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 ANGPTL5Q86XS5 388 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 FOXRED1Q96CU9 486 aaPredicted RBP11.76□□□□□ -0.53
SDC1-204ENST00000429035 OR5M11Q96RB7 305 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 NRIP2Q9BQI9 281 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 V9GYS6 101 aa11.76□□□□□ -0.53
SDC1-204ENST00000429035 PQLC2LA1A4F0 135 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 FAM107AO95990 144 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 HOXB6P17509 224 aaKnown RBP11.75□□□□□ -0.53
SDC1-204ENST00000429035 RAB13P51153 203 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 ACTR3P61158 418 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 SSX2Q16385 188 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 AANATQ16613 207 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 MEPCEQ7L2J0 689 aaKnown RBP11.75□□□□□ -0.53
SDC1-204ENST00000429035 GDPD3Q7L5L3 318 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 KRT74Q7RTS7 529 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 TCEANCQ8N8B7 351 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 YIPF7Q8N8F6 280 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 OR13D1Q8NGV5 346 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 OR14K1Q8NGZ2 314 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 RPS4Y2Q8TD47 263 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 DNAJC9Q8WXX5 260 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 SLAMF9Q96A28 289 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 ZNF702PQ9H963 129 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 SLC7A11Q9UPY5 501 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 SLC22A13Q9Y226 551 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 TCF19Q9Y242 345 aa11.75□□□□□ -0.53
SDC1-204ENST00000429035 F2RL2O00254 374 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 DLGAP1O14490 977 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 PIN1P1O15428 100 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 GYG2O15488 501 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 CD28P10747 220 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 DAPP51397 102 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 PTGES3Q15185 160 aaKnown RBP11.74□□□□□ -0.53
SDC1-204ENST00000429035 DNAL1Q4LDG9 190 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 SAMD5Q5TGI4 173 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 CRIP3Q6Q6R5 217 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 CALHM1Q8IU99 346 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 ELMOD2Q8IZ81 293 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 DYNAPQ8N1N2 210 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 C11orf42Q8N5U0 333 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 OR4S1Q8NGB4 309 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 NDNFQ8TB73 568 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 CFHR4Q92496 578 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 ITFG2Q969R8 447 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 ADGRL4Q9HBW9 690 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 KRT84Q9NSB2 600 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 TBL2Q9Y4P3 447 aaKnown RBP11.74□□□□□ -0.53
SDC1-204ENST00000429035 SNX5Q9Y5X3 404 aa11.74□□□□□ -0.53
SDC1-204ENST00000429035 MITFO75030 526 aaPredicted RBP11.73□□□□□ -0.53
SDC1-204ENST00000429035 NOS1APO75052 506 aaPredicted RBP11.73□□□□□ -0.53
SDC1-204ENST00000429035 SRSF10O75494 262 aaKnown RBP11.73□□□□□ -0.53
SDC1-204ENST00000429035 APOL3O95236 402 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 KRT8P05787 483 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 SNU13P55769 128 aaKnown RBP11.73□□□□□ -0.53
SDC1-204ENST00000429035 CNN3Q15417 329 aaKnown RBP11.73□□□□□ -0.53
SDC1-204ENST00000429035 TMEM42Q69YG0 159 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 SSX6Q7RTT6 188 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 DTX3Q8N9I9 347 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 MRAPQ8TCY5 172 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 EMG1Q92979 244 aaKnown RBP11.73□□□□□ -0.53
SDC1-204ENST00000429035 R3HDM4Q96D70 268 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 CEP19Q96LK0 163 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 IL4I1Q96RQ9 567 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 CADM1Q9BY67 442 aaKnown RBP11.73□□□□□ -0.53
SDC1-204ENST00000429035 PKIBQ9C010 78 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 HES4Q9HCC6 221 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 CLN6Q9NWW5 311 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 MRM2Q9UI43 246 aaKnown RBP11.73□□□□□ -0.53
SDC1-204ENST00000429035 PITPNC1Q9UKF7 332 aa11.73□□□□□ -0.53
SDC1-204ENST00000429035 A0A1B0GTI1 187 aa11.72□□□□□ -0.53
SDC1-204ENST00000429035 TCRBV3S1A0A5B6 114 aa11.72□□□□□ -0.53
SDC1-204ENST00000429035 K7N7A8 449 aa11.72□□□□□ -0.53
SDC1-204ENST00000429035 SYT7O43581 403 aa11.72□□□□□ -0.53
SDC1-204ENST00000429035 GATBO75879 557 aaKnown RBP11.72□□□□□ -0.53
SDC1-204ENST00000429035 CHRM2P08172 466 aa11.72□□□□□ -0.53
SDC1-204ENST00000429035 ZNF728P0DKX0 622 aa11.72□□□□□ -0.53
SDC1-204ENST00000429035 JUNBP17275 347 aaPredicted RBP11.72□□□□□ -0.53
SDC1-204ENST00000429035 GABRR1P24046 479 aa11.72□□□□□ -0.53
SDC1-204ENST00000429035 MPZP25189 248 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms