RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 ZBTB25P24278 435 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 AMTP48728 403 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 FUT5Q11128 374 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 MARCH1Q8TCQ1 289 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ABHD6Q9BV23 337 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TMEM14AQ9Y6G1 99 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 DNAJC25-GNG10A0A024R161 153 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 GJB5O95377 273 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 GP1BBP13224 206 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TCL1AP56279 114 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SOX8P57073 446 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 LY6G6FQ5SQ64 297 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SEH1LQ96EE3 360 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ANKRD36A6QL64 1941 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 GPR137BO60478 399 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ZNRF4Q8WWF5 429 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 C1QTNF2Q9BXJ5 285 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 RSPO3Q9BXY4 272 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 B5MCH6 92 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 PNMTP11086 282 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ARR3P36575 388 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CDKN1AP38936 164 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 THBS3P49746 956 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ALG14Q96F25 216 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ACTR3CQ9C0K3 210 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CLN8Q9UBY8 286 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 A0A1B0GTH9 108 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 MPC1LP0DKB6 136 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 FCER1GP30273 86 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 OR1D2P34982 312 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 LGALS7P47929 136 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 RNASEKQ6P5S7 137 aaKnown RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ZDHHC22Q8N966 263 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CCDC71LQ8N9Z2 235 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SPHK2Q9NRA0 654 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 MARCH5Q9NX47 278 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TMED7Q9Y3B3 224 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 RNF222A6NCQ9 220 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SHISA8B8ZZ34 492 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 H0YIZ8 118 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 UTS2O95399 124 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ZSCAN4Q8NAM6 433 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 VOPP1Q96AW1 172 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 BORCS7Q96B45 105 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SRA1Q9HD15 236 aaKnown RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 A0A1B0GU03 582 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SNAI2O43623 268 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CTSDP07339 412 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TMEM249Q2WGJ8 235 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TMEM251Q8N6I4 163 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF479Q96JC4 524 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 GPR62Q9BZJ7 368 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ABCA7Q8IZY2 2146 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 A0A1W2PPC1 479 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 MANSC4A6NHS7 340 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 NEURL1O76050 574 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 JTBO76095 146 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 PAX2Q02962 417 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 Q9N2K0 584 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 PPP1CCP36873 323 aaKnown RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CX3CR1P49238 355 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 PMPCAQ10713 525 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 COL11A1P12107 1806 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 FGF16O43320 207 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 HRH1P35367 487 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 KCTD18Q6PI47 426 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SPRED2Q7Z698 418 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 OR4B1Q8NGF8 309 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SLC39A9Q9NUM3 307 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 FOXD3Q9UJU5 478 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 TIMM10BQ9Y5J6 103 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ITGBL1O95965 494 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 RPL22L1Q6P5R6 122 aaKnown RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CXCL17Q6UXB2 119 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 DNASE2BQ8WZ79 361 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SCARF2Q96GP6 870 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 UBL7Q96S82 380 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CHST8Q9H2A9 424 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 IL26Q9NPH9 171 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 B4GALT6Q9UBX8 382 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CSTBP04080 98 aaKnown RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 FCARP24071 287 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 CEACAM21Q3KPI0 293 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 RFNGQ9Y644 331 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ZNF236Q9UL36 1845 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 LRRC25Q8N386 305 aaPredicted RBP3.04□□□□□ -1.92
SYNE1-212ENST00000423061 DEC1Q9P2X7 70 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 LCN6P62502 163 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 OR6T1Q8NGN1 323 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 PELI2Q9HAT8 420 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 B4GALT7Q9UBV7 327 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 PLPP2O43688 288 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 FUT1P19526 365 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 AGBL5Q8NDL9 886 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ARRDC5A6NEK1 342 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 ALKBH6Q3KRA9 238 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 PLCXD3Q63HM9 321 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 GPR150Q8NGU9 434 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 SIGLEC11Q96RL6 698 aa3.04□□□□□ -1.92
SYNE1-212ENST00000423061 RBKSQ9H477 322 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms