RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 LGALS4P56470 323 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 COL10A1Q03692 680 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 NSUN5P1Q3KNT7 163 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 LDLRAD2Q5SZI1 272 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 FAHD1Q6P587 224 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 CCBE1Q6UXH8 406 aaPredicted RBP9.37□□□□□ -0.91
USP4-204ENST00000416417 ZNF561Q8N587 486 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 ASCC1Q8N9N2 400 aaKnown RBP9.37□□□□□ -0.91
USP4-204ENST00000416417 OR5K1Q8NHB7 308 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 ASB17Q8WXJ9 295 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 TEX12Q9BXU0 123 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 FAM234AQ9H0X4 552 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 HEXA-AS1Q9H8Q6 139 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 ADGRL4Q9HBW9 690 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 POMPQ9Y244 141 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 R4GMQ9 66 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 V9GYS6 101 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 TET2Q6N021 2002 aaPredicted RBP9.37□□□□□ -0.91
USP4-204ENST00000416417 TK1P04183 234 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 CALCBP10092 127 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 KIR2DS4P43632 304 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 DLX6P56179 175 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 FAM189A2Q15884 450 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 ZBTB37Q5TC79 503 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 AADACL4Q5VUY2 407 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 TMEM42Q69YG0 159 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 ZNF573Q86YE8 665 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 ELMOD2Q8IZ81 293 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 OR2T6Q8NHC8 308 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 SLAMF9Q96A28 289 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 SLC7A6OSQ96CW6 309 aaPredicted RBP9.36□□□□□ -0.91
USP4-204ENST00000416417 OR5M11Q96RB7 305 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 ZNF702PQ9H963 129 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 USE1Q9NZ43 259 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 IL36RNQ9UBH0 155 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 TMEM14AQ9Y6G1 99 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 IGKV1-27A0A075B6S5 117 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 ZNF670-ZNF695F2Z2N8 137 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 NOS1APO75052 506 aaPredicted RBP9.36□□□□□ -0.91
USP4-204ENST00000416417 ARG1P05089 322 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 CD28P10747 220 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 EDDM3BP56851 147 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 EDDM3AQ14507 147 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 BEAN1Q3B7T3 259 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 Q6ZS46 218 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 TPRX1Q8N7U7 411 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 YIPF7Q8N8F6 280 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 CFHR4Q92496 578 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 UTP4Q969X6 686 aaKnown RBP9.36□□□□□ -0.91
USP4-204ENST00000416417 CADM1Q9BY67 442 aaKnown RBP9.36□□□□□ -0.91
USP4-204ENST00000416417 HES4Q9HCC6 221 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 KRT84Q9NSB2 600 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 MTCH1Q9NZJ7 389 aa9.36□□□□□ -0.91
USP4-204ENST00000416417 H2AFY2Q9P0M6 372 aaPredicted RBP9.36□□□□□ -0.91
USP4-204ENST00000416417 DLGAP1O14490 977 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 POLR2IP36954 125 aaKnown RBP9.35□□□□□ -0.91
USP4-204ENST00000416417 SNU13P55769 128 aaKnown RBP9.35□□□□□ -0.91
USP4-204ENST00000416417 ERVK11-1P61568 191 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 EFNB1P98172 346 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 DYNC1I2Q13409 638 aaKnown RBP9.35□□□□□ -0.91
USP4-204ENST00000416417 UBE2V2Q15819 145 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 SSX2Q16385 188 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 SLX4IPQ5VYV7 408 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 C12orf73Q69YU5 71 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 TCF23Q7RTU1 214 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 AMIGO2Q86SJ2 522 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 TMEM163Q8TC26 289 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 NPFFR1Q9GZQ6 430 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 CHST6Q9GZX3 395 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 SERTAD4Q9NUC0 356 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 CLN6Q9NWW5 311 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 POLDIP2Q9Y2S7 368 aa9.35□□□□□ -0.91
USP4-204ENST00000416417 A0A1W2PPH5 198 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 A0A1W2PQL4 384 aaPredicted RBP9.34□□□□□ -0.91
USP4-204ENST00000416417 TMEM82A0PJX8 343 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 FAM90A8PA6NJQ4 464 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 ZAR1LA6NP61 321 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 C17orf98A8MV24 154 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 K7N7A8 449 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 OPN1MWP04001 364 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 OPN1MW2P0DN77 364 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 OPN1MW3P0DN78 364 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 MPZP25189 248 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 DUSP1P28562 367 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 TMEM95Q3KNT9 176 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 DNAL1Q4LDG9 190 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 OXLD1Q5BKU9 147 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 SAMD5Q5TGI4 173 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 NXNL2Q5VZ03 156 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 BAIAP2L2Q6UXY1 529 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 RDH10Q8IZV5 341 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 MMP28Q9H239 520 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 MOB1AQ9H8S9 216 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 HILPDAQ9Y5L2 63 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 SNX5Q9Y5X3 404 aa9.34□□□□□ -0.91
USP4-204ENST00000416417 A6NDX4 124 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 ODF3BA8MYP8 253 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 ZNF737O75373 536 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 DNAJC8O75937 253 aaPredicted RBP9.33□□□□□ -0.92
USP4-204ENST00000416417 IGHA1P01876 353 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms