RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 RHOFQ9HBH0 211 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 TNRC6AQ8NDV7 1962 aaKnown RBP11.76□□□□□ -0.53
LIMS1-205ENST00000410093 ARHGAP21Q5T5U3 1957 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 A0A1W2PP11 408 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 FAM230AA0A1W2PPH8 454 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 FIGNL2A6NMB9 653 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 OR2AT4A6NND4 320 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 K7ENP7 123 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 SS18L1O75177 396 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-205ENST00000410093 RP2O75695 350 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 HTR3BO95264 441 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 CSN2P05814 226 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 RFC3P40938 356 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 SRSF7Q16629 238 aaKnown RBP eCLIP11.76□□□□□ -0.53
LIMS1-205ENST00000410093 FBXW9Q5XUX1 488 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 PLCXD3Q63HM9 321 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 INO80CQ6PI98 192 aaPredicted RBP11.76□□□□□ -0.53
LIMS1-205ENST00000410093 MOB3CQ70IA8 216 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 OVCH2Q7RTZ1 564 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 RNF144BQ7Z419 303 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 TMEM200AQ86VY9 491 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 OSR2Q8N2R0 312 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 CPEB3Q8NE35 698 aaKnown RBP11.76□□□□□ -0.53
LIMS1-205ENST00000410093 OR5D18Q8NGL1 313 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 COQ8AQ8NI60 647 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 FGFBP3Q8TAT2 258 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 SLC39A7Q92504 469 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 MARVELD3Q96A59 401 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 MRGPRFQ96AM1 343 aa11.76□□□□□ -0.53
LIMS1-205ENST00000410093 CACNA1GO43497 2377 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 TRAV17A0A0B4J275 112 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 ANKRD34BA5PLL1 514 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 OR5H14A6NHG9 310 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 DBX1A6NMT0 343 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 ERVH48-1M5A8F1 160 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 RAD51DO75771 328 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 PATE4P0C8F1 98 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 EDN3P14138 238 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 CALCRP30988 508 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 APLNRP35414 380 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 RAB1AP62820 205 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 TGFBR3Q03167 851 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 PPP1R1AQ13522 171 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 TGIF1Q15583 401 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 NHLRC3Q5JS37 347 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 LY6G6FQ5SQ64 297 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 ELP2Q6IA86 826 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 RPUSD3Q6P087 351 aaKnown RBP11.75□□□□□ -0.53
LIMS1-205ENST00000410093 C3P1Q6ZMU1 363 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 MRPL21Q7Z2W9 205 aaKnown RBP11.75□□□□□ -0.53
LIMS1-205ENST00000410093 LINC00596Q86U02 117 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 VRK1Q99986 396 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-205ENST00000410093 PDCD10Q9BUL8 212 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 DPCDQ9BVM2 203 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-205ENST00000410093 NMES1Q9C002 83 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 PLK3Q9H4B4 646 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 RAB18Q9NP72 206 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 DECR2Q9NUI1 292 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 KIF25Q9UIL4 384 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 OSGIN2Q9Y236 505 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 AUP1Q9Y679 476 aa11.75□□□□□ -0.53
LIMS1-205ENST00000410093 MED13Q9UHV7 2174 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 POM121CA8CG34 1229 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 ATXN7O15265 892 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-205ENST00000410093 OR2F2O95006 317 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 CXCL2P19875 107 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 CHATP28329 748 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 AP2S1P53680 142 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-205ENST00000410093 MRPL49Q13405 166 aaKnown RBP11.74□□□□□ -0.53
LIMS1-205ENST00000410093 OR2F1Q13607 317 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 CEACAM21Q3KPI0 293 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 TMEM211Q6ICI0 200 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 TMUB2Q71RG4 321 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 OR5A2Q8NGI9 324 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 OR1K1Q8NGR3 316 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 OR6K3Q8NGY3 331 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 MARCH1Q8TCQ1 289 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 PIGCQ92535 297 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 BOD1Q96IK1 185 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 POM121L2Q96KW2 1035 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 HIST1H2AAQ96QV6 131 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 ST6GALNAC5Q9BVH7 336 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 GSX2Q9BZM3 304 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 C14orf166Q9Y224 244 aaKnown RBP11.74□□□□□ -0.53
LIMS1-205ENST00000410093 MPC1Q9Y5U8 109 aa11.74□□□□□ -0.53
LIMS1-205ENST00000410093 CNTRLQ7Z7A1 2325 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 ZFYVE26Q68DK2 2539 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 IGKV1-27A0A075B6S5 117 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 LOC100509620A0A075B734 347 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 A0A1B0GW55 424 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 PQLC2LA1A4F0 135 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 A6NL46 340 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 PDCD6O75340 191 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 B3GALNT1O75752 331 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 SFT2D2O95562 160 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 MPC2O95563 127 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 DUX4L2P0CJ85 424 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 DUX4L3P0CJ86 424 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 DUX4L4P0CJ87 422 aa11.73□□□□□ -0.53
LIMS1-205ENST00000410093 DUX4L5P0CJ88 424 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms