RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CHST5Q9GZS9 411 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 ALX4Q9H161 411 aaPredicted RBP11.64□□□□□ -0.55
VPS54-203ENST00000409558 RFNGQ9Y644 331 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 F8W036 122 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 LRP3O75074 770 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 GSTP1P09211 210 aaKnown RBP11.64□□□□□ -0.55
VPS54-203ENST00000409558 UBBP0CG47 229 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 RAC3P60763 192 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 UBA52P62987 128 aaKnown RBP11.64□□□□□ -0.55
VPS54-203ENST00000409558 BLOC1S1P78537 153 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 ZNF616Q08AN1 781 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 IGSF11Q5DX21 431 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 MCEMP1Q8IX19 187 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 KCNRGQ8N5I3 272 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 DTWD2Q8NBA8 298 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 OR5AP2Q8NGF4 316 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 ZNF700Q9H0M5 742 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 LIME1Q9H400 295 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 IGKV1-12A0A0C4DH73 117 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 IGKV1D-12P01611 117 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.64□□□□□ -0.55
VPS54-203ENST00000409558 HSD17B11Q8NBQ5 300 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 OR2V1Q8NHB1 315 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 HAS2Q92819 552 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 ATP6V1G2-DDX39BF2Z307 99 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 F8VVB4 439 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 F8VWA3 439 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 C1QL1O75973 258 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 SFT2D2O95562 160 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 OR5AC1P0C628 307 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 CNR1P21554 472 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 MECP2P51608 486 aaKnown RBP11.64□□□□□ -0.55
VPS54-203ENST00000409558 PMP22Q01453 160 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 SLC25A53Q5H9E4 307 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 LYZL2Q7Z4W2 148 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 SGPP2Q8IWX5 399 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 CPEB3Q8NE35 698 aaKnown RBP11.64□□□□□ -0.55
VPS54-203ENST00000409558 RNF126Q9BV68 326 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 EDEM2Q9BV94 578 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 LNP1A1A4G5 178 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 PHF1O43189 567 aaPredicted RBP11.63□□□□□ -0.55
VPS54-203ENST00000409558 PPIAP62937 165 aaKnown RBP11.63□□□□□ -0.55
VPS54-203ENST00000409558 GUCA2BQ16661 112 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 P4HA3Q7Z4N8 544 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 CBLN2Q8IUK8 224 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 SLC7A11Q9UPY5 501 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 DMXL2Q8TDJ6 3036 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 MED6O75586 246 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 HPP00738 406 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 HOXD4P09016 255 aaPredicted RBP11.63□□□□□ -0.55
VPS54-203ENST00000409558 ZNF16P17020 682 aaPredicted RBP11.63□□□□□ -0.55
VPS54-203ENST00000409558 EPHA1P21709 976 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 ADH6P28332 368 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 GSK3AP49840 483 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 SSBP1Q04837 148 aaKnown RBP11.63□□□□□ -0.55
VPS54-203ENST00000409558 RBM39Q14498 530 aaKnown RBP11.63□□□□□ -0.55
VPS54-203ENST00000409558 CLINT1Q14677 625 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 ZNF100Q8IYN0 542 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 ZDHHC22Q8N966 263 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 C20orf24Q9BUV8 137 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 TMEM38BQ9NVV0 291 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 EIF3GO75821 320 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS54-203ENST00000409558 LSM6P62312 80 aaKnown RBP11.63□□□□□ -0.55
VPS54-203ENST00000409558 MPPED2Q15777 294 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 PAN3Q58A45 887 aaKnown RBP11.63□□□□□ -0.55
VPS54-203ENST00000409558 ZNF611Q8N823 705 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 SLC26A1Q9H2B4 701 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 WDR54Q9H977 334 aa11.63□□□□□ -0.55
VPS54-203ENST00000409558 DKK1O94907 266 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 OR2F2O95006 317 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 VAMP5O95183 116 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 OR2F1Q13607 317 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 OR10AD1Q8NGE0 317 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 OR6S1Q8NH40 331 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 BSCL2Q96G97 398 aaPredicted RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 RCL1Q9Y2P8 373 aaKnown RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 RBM7Q9Y580 266 aaKnown RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 LRRC3CA6NJW4 275 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 TMEM127O75204 238 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 PRH1P02810 166 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 NR2C1P13056 603 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 THBS4P35443 961 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 FHITP49789 147 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 IZUMO4Q1ZYL8 232 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 HIKESHIQ53FT3 197 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 BAP18Q8IXM2 172 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 RASL12Q9NYN1 266 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 ZP3P21754 424 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 ZFP36L1Q07352 338 aaKnown RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 CXorf67Q86X51 503 aaPredicted RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 UBALD2Q8IYN6 164 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 ZFP82Q8N141 532 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 TMEM217Q8N7C4 229 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 RTN4IP1Q8WWV3 396 aaPredicted RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 EMG1Q92979 244 aaKnown RBP11.62□□□□□ -0.55
VPS54-203ENST00000409558 LOC105371267A0A1B0GV96 52 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 ARGFXA6NJG6 315 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 HSD17B6O14756 317 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 NME2P1O60361 137 aa11.62□□□□□ -0.55
VPS54-203ENST00000409558 IFNA2P01563 188 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms