RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 IFNL4K9M1U5 179 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 NXPH2O95156 264 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 CYB5R3P00387 301 aaPredicted RBP15.24■□□□□ 0.03
SDC1-203ENST00000403076 PGA5P0DJD9 388 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 VSIG8P0DPA2 414 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 GLRA1P23415 457 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 NPBWR2P48146 333 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 Q8IYB0 196 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 POC1AQ8NBT0 407 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 OR5H6Q8NGV6 325 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 Q8TCH9 128 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 RDH5Q92781 318 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 EMG1Q92979 244 aaKnown RBP15.24■□□□□ 0.03
SDC1-203ENST00000403076 BANF2Q9H503 90 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 PTTG2Q9NZH5 202 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 PLEKHA6Q9Y2H5 1048 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 CACNG2Q9Y698 323 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 USF3Q68DE3 2245 aa15.24■□□□□ 0.03
SDC1-203ENST00000403076 CHD3Q12873 2000 aaKnown RBP15.24■□□□□ 0.03
SDC1-203ENST00000403076 A0A075B6Q4 140 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 TMEM272A0A1B0GTI8 110 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 LYNX1G3V0Z9 82 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 RGS5O15539 181 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 NDUFS7O75251 213 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 LY6HO94772 140 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 MPIG6BO95866 241 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 SFTPBP07988 381 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 LYNX1P0DP58 116 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 COL8A2P25067 703 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 RBMXP38159 391 aaKnown RBP15.23■□□□□ 0.03
SDC1-203ENST00000403076 EFNA4P52798 201 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 OR2W3Q7Z3T1 314 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 TGIF2LYQ8IUE0 185 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 C1orf87Q8N0U7 546 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 FAM58AQ8N1B3 248 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 SAMD12Q8N8I0 201 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 IGFBPL1Q8WX77 278 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 C1orf147Q96MC9 270 aaPredicted RBP15.23■□□□□ 0.03
SDC1-203ENST00000403076 TMEM106BQ9NUM4 274 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 RBFOX1Q9NWB1 397 aaKnown RBP15.23■□□□□ 0.03
SDC1-203ENST00000403076 IL36GQ9NZH8 169 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 SPATA2Q9UM82 520 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 ETV7Q9Y603 341 aa15.23■□□□□ 0.03
SDC1-203ENST00000403076 A0A1W2PP11 408 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 F8VVB4 439 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 F8VWA3 439 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 NOS1APO75052 506 aaPredicted RBP15.22■□□□□ 0.03
SDC1-203ENST00000403076 F12P00748 615 aaPredicted RBP15.22■□□□□ 0.03
SDC1-203ENST00000403076 ACAA1P09110 424 aaPredicted RBP15.22■□□□□ 0.03
SDC1-203ENST00000403076 GTF2F2P13984 249 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 DAOP14920 347 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 MGMTP16455 207 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 PRKACAP17612 351 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 CFHR2P36980 270 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 BMXP51813 675 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 SNU13P55769 128 aaKnown RBP15.22■□□□□ 0.03
SDC1-203ENST00000403076 SCAND1P57086 179 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 DYNC1I2Q13409 638 aaKnown RBP15.22■□□□□ 0.03
SDC1-203ENST00000403076 OSR2Q8N2R0 312 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 TMEM104Q8NE00 496 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 GAL3ST1Q99999 423 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 NRIP2Q9BQI9 281 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 TMEM59Q9BXS4 323 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 MMP27Q9H306 513 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 DLL4Q9NR61 685 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 RAB22AQ9UL26 194 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 A3GALT2U3KPV4 340 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 SPG11Q96JI7 2443 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 DYSFO75923 2080 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 TMEM14DPA8MWL7 114 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 SRRM5B3KS81 715 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 C3orf80F5H4A9 247 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 CTDSP2O14595 271 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 WNT9BO14905 357 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 CARTPTQ16568 116 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 ZNF181Q2M3W8 571 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 FIP1L1Q6UN15 594 aaKnown RBP15.22■□□□□ 0.03
SDC1-203ENST00000403076 GCSAMQ8N6F7 178 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 SELENOIQ9C0D9 397 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 NXF2Q9GZY0 626 aaKnown RBP15.22■□□□□ 0.03
SDC1-203ENST00000403076 WDR13Q9H1Z4 485 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 RHOFQ9HBH0 211 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 DCAF16Q9NXF7 216 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 DNAJB11Q9UBS4 358 aa15.22■□□□□ 0.03
SDC1-203ENST00000403076 TMEM178BH3BS89 294 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 HPGDSO60760 199 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 EGR1P18146 543 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 DNASE1P24855 282 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 CD80P33681 288 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 ART1P52961 327 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 ATP5J2P56134 94 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 ERVK11-1P61568 191 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 QRFPP83859 136 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 UNC119Q13432 240 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 SMIM21Q3B7S5 101 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 ELP2Q6IA86 826 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 YIPF5Q969M3 257 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 URM1Q9BTM9 101 aaKnown RBP15.21■□□□□ 0.03
SDC1-203ENST00000403076 HMG20AQ9NP66 347 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 RASL12Q9NYN1 266 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms