RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 MAP2K3P46734 347 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 SEC61A1P61619 476 aaKnown RBP12.17□□□□□ -0.46
SEC13-208ENST00000397109 GNB2P62879 340 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 RGS21Q2M5E4 152 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 TP53I3Q53FA7 332 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 DDI2Q5TDH0 399 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 METAP1DQ6UB28 335 aaPredicted RBP12.17□□□□□ -0.46
SEC13-208ENST00000397109 UNQ9370/PRO34162Q6UXP9 181 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 YIPF7Q8N8F6 280 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 SPATA3Q8NHX4 192 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 LYZL4Q96KX0 146 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 RTL8AQ9BWD3 113 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 PBOV1Q9GZY1 135 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 SMURF1Q9HCE7 757 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 NUFIP1Q9UHK0 495 aaKnown RBP12.17□□□□□ -0.46
SEC13-208ENST00000397109 GNG8Q9UK08 70 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 ZNF281Q9Y2X9 895 aa12.17□□□□□ -0.46
SEC13-208ENST00000397109 E9PI62 339 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 TRAPPC2LH3BP13 241 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 ACKR3P25106 362 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 MAPK3P27361 379 aaPredicted RBP12.16□□□□□ -0.46
SEC13-208ENST00000397109 PITPNBP48739 271 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 CCR9P51686 369 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 PPP3R1P63098 170 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 ACSM3Q53FZ2 586 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 BOLLQ8N9W6 283 aaKnown RBP12.16□□□□□ -0.46
SEC13-208ENST00000397109 DEFB108BQ8NET1 73 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 OR1M1Q8NGA1 313 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 CHPT1Q8WUD6 406 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 HIST1H2AAQ96QV6 131 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 MRI1Q9BV20 369 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 OCEL1Q9H607 264 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 MMP26Q9NRE1 261 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 OPN4Q9UHM6 478 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 ADAM30Q9UKF2 790 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 INSIG2Q9Y5U4 225 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 CUBNO60494 3623 aa12.16□□□□□ -0.46
SEC13-208ENST00000397109 ZNF816-ZNF321PA0A0X1KG74 233 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 OOEPA6NGQ2 149 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 TMEM210A6NLX4 147 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 ZNF879B4DU55 563 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 J3QRK9 145 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 LHBP01229 141 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 IGLV3-1P01715 115 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 EPHA1P21709 976 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 TNFSF8P32971 234 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 CFHR2P36980 270 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 NPY4RP50391 375 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 MFGE8Q08431 387 aaPredicted RBP12.15□□□□□ -0.46
SEC13-208ENST00000397109 ZNF154Q13106 437 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 PRDX4Q13162 271 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 ALKBH1Q13686 389 aaKnown RBP12.15□□□□□ -0.46
SEC13-208ENST00000397109 BTNL3Q6UXE8 466 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 ZNF826PQ6ZT77 177 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 KRT74Q7RTS7 529 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 CEACAM19Q7Z692 300 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 COMMD2Q86X83 199 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 CATSPERDQ86XM0 798 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 PARP16Q8N5Y8 322 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 ZNF418Q8TF45 676 aaPredicted RBP12.15□□□□□ -0.46
SEC13-208ENST00000397109 PIGCQ92535 297 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 ITPKCQ96DU7 683 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 ZCCHC4Q9H5U6 513 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 CLN8Q9UBY8 286 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 AUP1Q9Y679 476 aa12.15□□□□□ -0.46
SEC13-208ENST00000397109 ZNF850A8MQ14 1090 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 C3orf80F5H4A9 247 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 CTDSP2O14595 271 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 MTRF1O75570 445 aaKnown RBP12.14□□□□□ -0.47
SEC13-208ENST00000397109 UPK1BO75841 260 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 UCHL1P09936 223 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 CD80P33681 288 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 PSMB10P40306 273 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 MXD1Q05195 221 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 RIPPLY1Q0D2K3 151 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 ZBTB37Q5TC79 503 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 WDR25Q64LD2 544 aaPredicted RBP12.14□□□□□ -0.47
SEC13-208ENST00000397109 SFRP4Q6FHJ7 346 aaPredicted RBP12.14□□□□□ -0.47
SEC13-208ENST00000397109 LYPD2Q6UXB3 125 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 Q6ZNX1 250 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 WDR86Q86TI4 376 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 C11orf53Q8IXP5 236 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 ZDHHC23Q8IYP9 409 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 ELMOD2Q8IZ81 293 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 GCSAMQ8N6F7 178 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 C19orf18Q8NEA5 215 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 SEMA6DQ8NFY4 1073 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 OR2G2Q8NGZ5 317 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 OR51E1Q8TCB6 317 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 RAB40AQ8WXH6 277 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 OR5P3Q8WZ94 311 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 TLNRD1Q9H1K6 362 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 TMEM212A6NML5 194 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 RGS5O15539 181 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 RPP14O95059 124 aaKnown RBP12.14□□□□□ -0.47
SEC13-208ENST00000397109 TTRP02766 147 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 MUC1P15941 1255 aaPredicted RBP12.14□□□□□ -0.47
SEC13-208ENST00000397109 ADRA2CP18825 462 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 FPR2P25090 351 aa12.14□□□□□ -0.47
SEC13-208ENST00000397109 NANOS3P60323 173 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms