RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 OR5H15A6NDH6 313 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 M0R135 149 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 SOCS1O15524 211 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 RAB4AP20338 218 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 ZBTB25P24278 435 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 CTSSP25774 331 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 RPS27AP62979 156 aaKnown RBP8.46□□□□□ -1.06
COL6A3-204ENST00000392003 UBA52P62987 128 aaKnown RBP8.46□□□□□ -1.06
COL6A3-204ENST00000392003 H3F3AP84243 136 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 FOXRED2Q8IWF2 684 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 PP6455Q8WZ26 134 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF799Q96GE5 643 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 TCFL5Q9UL49 500 aa8.46□□□□□ -1.06
COL6A3-204ENST00000392003 PHF3Q92576 2039 aaKnown RBP8.46□□□□□ -1.06
COL6A3-204ENST00000392003 PTPRZ1P23471 2315 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 FAM186AA6NE01 2351 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 C1orf196B1AJZ1 125 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 EFSO43281 561 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 ZIC3O60481 467 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 CA11O75493 328 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 DHRS3O75911 302 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 SCAF4O95104 1147 aaKnown RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 FCGR2AP12318 317 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF44P15621 663 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 NFYBP25208 207 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 HTR5AP47898 357 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 EIF3IQ13347 325 aaKnown RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 KISS1Q15726 138 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 LY6G6FQ5SQ64 297 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 DHRS13Q6UX07 377 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF561Q8N587 486 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 INO80EQ8NBZ0 244 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 OR5D18Q8NGL1 313 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 OR6K3Q8NGY3 331 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 TERB2Q8NHR7 220 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 A0A0J9YW62 118 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 A0A0U1RQV5 110 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 WIPF3A6NGB9 483 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 OR2F2O95006 317 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 CD8AP01732 235 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF883P0CG24 379 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 OR2F1Q13607 317 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 GAMTQ14353 236 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 ATXN7L3Q14CW9 347 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 OR1S1Q8NH92 325 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 MARCH1Q8TCQ1 289 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 CT55Q8WUE5 264 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 MITD1Q8WV92 249 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM9BQ9NQ34 198 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 PIGLQ9Y2B2 252 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 MAP1BP46821 2468 aaKnown RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 C13orf42A0A1B0GVH6 325 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 EEF1E1-BLOC1S5C9J1V9 151 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 DNPH1O43598 174 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 MGMTP16455 207 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 DLSTP36957 453 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 ENDOGQ14249 297 aaKnown RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 TGIF1Q15583 401 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 C11orf87Q6NUJ2 197 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 C1orf122Q6ZSJ8 110 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 YRDCQ86U90 279 aaKnown RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 GPR137CQ8N3F9 429 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 IL22RA1Q8N6P7 574 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 OR56B2PQ8NGI1 322 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 KCNE4Q8WWG9 221 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 MAFIPQ8WZ33 124 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF775Q96BV0 537 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 LIN37Q96GY3 246 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 ARHGAP5-AS1Q96IT6 56 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 LOXL4Q96JB6 756 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 TMEM208Q9BTX3 173 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 SF3B5Q9BWJ5 86 aaKnown RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 TREM1Q9NP99 234 aa8.45□□□□□ -1.06
COL6A3-204ENST00000392003 RYDENQ9NUL5 291 aaKnown RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 ZNF230Q9UIE0 474 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-204ENST00000392003 RIF1Q5UIP0 2472 aaKnown RBP8.44□□□□□ -1.06
COL6A3-204ENST00000392003 VPS13AQ96RL7 3174 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 OR2AT4A6NND4 320 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 HSBP1L1C9JCN9 74 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 DUS4LO95620 317 aaKnown RBP8.44□□□□□ -1.06
COL6A3-204ENST00000392003 CRHP06850 196 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 FAHP16930 419 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 SERPINA2P20848 420 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 BLVRBP30043 206 aaPredicted RBP8.44□□□□□ -1.06
COL6A3-204ENST00000392003 SRD5A2P31213 254 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 RAC3P60763 192 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 CYCSP99999 105 aaKnown RBP8.44□□□□□ -1.06
COL6A3-204ENST00000392003 RTL6Q6ICC9 239 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 RELL2Q8NC24 303 aaPredicted RBP8.44□□□□□ -1.06
COL6A3-204ENST00000392003 CSNK2A3Q8NEV1 391 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 ST6GALNAC5Q9BVH7 336 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 C19orf12Q9NSK7 152 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 P4HTMQ9NXG6 502 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 USP34Q70CQ2 3546 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 MT-CO3P00414 261 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 SLC25A4P12235 298 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 TUBG1P23258 451 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 CPT2P23786 658 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 TAS2R46P59540 309 aa8.44□□□□□ -1.06
COL6A3-204ENST00000392003 SPEM2Q0P670 501 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms