RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 FCN1O00602 326 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 SFT2D2O95562 160 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 EPPINO95925 133 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 LYZP61626 148 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 IL13RA2Q14627 380 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 SMIM12Q96EX1 92 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 ARHGAP5-AS1Q96IT6 56 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 UFC1Q9Y3C8 167 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 CDK2AP1O14519 115 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 BRS3P32247 399 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 ASCL1P50553 236 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 TUSC5Q8IXB3 177 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 OR2A5Q96R48 311 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 PLA2G3Q9NZ20 509 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 OR4A8P0C604 315 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 CDC34P49427 236 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 RSPO2Q6UXX9 243 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 RAB1CQ92928 201 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 TTC3P53804 2025 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 OR10C1Q96KK4 312 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 PTHLHP12272 177 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 SCAND1P57086 179 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 JMJD6Q6NYC1 403 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 ANKRD37Q7Z713 158 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 TMEM179BQ7Z7N9 219 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 TMEM116Q8NCL8 245 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 NAA60Q9H7X0 242 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 C20orf141Q9NUB4 165 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 A0A0B4J2E0 115 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 A0A1B0GX12 115 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 CRISP2P16562 243 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 NPY1RP25929 384 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 CD96P40200 585 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 OTPQ5XKR4 325 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 ASCL5Q7RTU5 278 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 OR4D10Q8NGI6 311 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 OR5C1Q8NGR4 320 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 LRRC29Q8WV35 223 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 MCHR2Q969V1 340 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 CNRIP1Q96F85 164 aaPredicted RBP11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 RBM14Q96PK6 669 aaKnown RBP11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 CA10Q9NS85 328 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 CDX4O14627 284 aaPredicted RBP11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 FAM87AP0C7U9 286 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 NQO2P16083 231 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 GLRX2Q9NS18 164 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 ZNF638Q14966 1978 aaKnown RBP11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 A0A1W2PNV4 684 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 OR8B3Q8NGG8 313 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 OR8B2Q96RD0 313 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 OCEL1Q9H607 264 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 TMEM167BQ9NRX6 74 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 HMX2A2RU54 273 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 MAP1LC3B2A6NCE7 125 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 CDC14BO60729 498 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 C20orf196Q8IYI0 205 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 LINC01465Q8N7H1 131 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 MAP1LC3BQ9GZQ8 125 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 SLC35B3Q9H1N7 401 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 TRAV38-1A0A0B4J264 116 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 NDUFB6O95139 128 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 COX7A1P24310 79 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 GGNBP1Q5YKI7 109 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 ETV3LQ6ZN32 361 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 OR4S2Q8NH73 311 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 VSTM2AQ8TAG5 236 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 C4orf45Q96LM5 186 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 SLC7A10Q9NS82 523 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 COA4Q9NYJ1 87 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 AKR7A2O43488 359 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 TMIGD3P0DMS9 266 aaPredicted RBP11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 RPS4Y1P22090 263 aaKnown RBP11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 TGFBR1P36897 503 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 ZNF117Q03924 483 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 SP6Q3SY56 376 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 ZBTB37Q5TC79 503 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 C12orf73Q69YU5 71 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 MMP25Q9NPA2 562 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 AKIP1Q9NQ31 210 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 NUP205Q92621 2012 aa11.41□□□□□ -0.58
CCDC88C-204ENST00000389857 TMEM196Q5HYL7 178 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 MRGPRX3Q96LB0 322 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 RASL11BQ9BPW5 248 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 ASB1Q9Y576 335 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 PKD1L3Q7Z443 1732 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 C5orf52A6NGY3 159 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 WSB1Q9Y6I7 421 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 C9orf170A2RU37 121 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 OR5B21A6NL26 309 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 CLDN34H7C241 214 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 ZNF707Q96C28 371 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 FAAP24Q9BTP7 215 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 KCNMB2Q9Y691 235 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 SLC37A1P57057 533 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 TMEM37Q8WXS4 190 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 MAP6Q96JE9 813 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 CACNG5Q9UF02 275 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 SHISA8B8ZZ34 492 aa11.4□□□□□ -0.58
CCDC88C-204ENST00000389857 ORM2P19652 201 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms