RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 U3KQ87 197 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 SNRPGP15A8MWD9 76 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 FCN1O00602 326 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 IGLV3-27P01718 113 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 OR5AC1P0C628 307 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 SFTPA1Q8IWL2 248 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 FAM24BQ8N5W8 94 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 TEX50A0A1B0GTY4 177 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 NTN1O95631 604 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 TSPAN12O95859 305 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 IGHA1P01876 353 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 IGHA2P01877 340 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 CD1BP29016 333 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 PSMB2P49721 201 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 RAB32Q13637 225 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 FAM53BQ14153 422 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 OR2A2Q6IF42 318 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 ABI3BPQ7Z7G0 1075 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 OR10D3Q8NH80 312 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 POM121Q96HA1 1249 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 TOLLIPQ9H0E2 274 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 SRD5A3Q9H8P0 318 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 BCL2L10Q9HD36 194 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 MTCH2Q9Y6C9 303 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 PHIPQ8WWQ0 1821 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 TMPRSS2O15393 492 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 SMUG1Q53HV7 270 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 FAM78BQ5VT40 261 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 ZG16BQ96DA0 208 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 AP5S1Q9NUS5 200 aa12.22□□□□□ -0.45
COL4A1-201ENST00000375820 K7ESF4 209 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 Q6ZNB5 142 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 CALHM3Q86XJ0 350 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 TM4SF19Q96DZ7 209 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 SLC26A1Q9H2B4 701 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 OR3A1P47881 315 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 MMP15P51511 669 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 LSM11P83369 360 aaKnown RBP eCLIP12.21□□□□□ -0.45
COL4A1-201ENST00000375820 MOB1BQ7L9L4 216 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 ANKRD33Q7Z3H0 272 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 ANKRD37Q7Z713 158 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 SMIM12Q96EX1 92 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 FGF20Q9NP95 211 aaPredicted RBP12.21□□□□□ -0.45
COL4A1-201ENST00000375820 SERPINE3A8MV23 424 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 SNRPCP09234 159 aaKnown RBP12.21□□□□□ -0.45
COL4A1-201ENST00000375820 NT5CQ8TCD5 201 aa12.21□□□□□ -0.45
COL4A1-201ENST00000375820 SLC17A2O00624 439 aa12.21□□□□□ -0.46
COL4A1-201ENST00000375820 MBTPS2O43462 519 aa12.21□□□□□ -0.46
COL4A1-201ENST00000375820 EPPINO95925 133 aa12.21□□□□□ -0.46
COL4A1-201ENST00000375820 SNRPEP62304 92 aaKnown RBP12.21□□□□□ -0.46
COL4A1-201ENST00000375820 GLDNQ6ZMI3 551 aaPredicted RBP12.21□□□□□ -0.46
COL4A1-201ENST00000375820 MUC20Q8N307 709 aaPredicted RBP12.21□□□□□ -0.46
COL4A1-201ENST00000375820 MAP6Q96JE9 813 aa12.21□□□□□ -0.46
COL4A1-201ENST00000375820 SFTPA2Q8IWL1 248 aa12.21□□□□□ -0.46
COL4A1-201ENST00000375820 SMIM4Q8WVI0 70 aa12.21□□□□□ -0.46
COL4A1-201ENST00000375820 EAF1Q96JC9 268 aaPredicted RBP12.21□□□□□ -0.46
COL4A1-201ENST00000375820 PRRX2Q99811 253 aa12.21□□□□□ -0.46
COL4A1-201ENST00000375820 MS4A18H0YCH9 400 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 MS4A18Q3C1V0 323 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 KLHDC1Q8N7A1 406 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 CXorf58Q96LI9 332 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 DUSP21Q9H596 190 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 CTSVO60911 334 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 MGPP08493 103 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 PTGFRP43088 359 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 SULT1A1P50225 295 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 AKIP1Q9NQ31 210 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 RPEL1Q2QD12 228 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 RNFT1Q5M7Z0 435 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 KMT5CQ86Y97 462 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 OR2M3Q8NG83 312 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 TAF1P21675 1872 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 TIAM2Q8IVF5 1701 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 GEMIN2O14893 280 aaKnown RBP12.2□□□□□ -0.46
COL4A1-201ENST00000375820 KLK8O60259 260 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 SP1P08047 785 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 FPR2P25090 351 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 PNLIPRP3Q17RR3 467 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 TUSC5Q8IXB3 177 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 MVB12AQ96EY5 273 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 CNTD2Q9H8S5 307 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 LMO7DNF2Z398 122 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 H3BVH4 76 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 CRYABP02511 175 aaKnown RBP12.2□□□□□ -0.46
COL4A1-201ENST00000375820 SOX8P57073 446 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 IGHV3OR15-7A0A075B7D8 119 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 MAP1LC3B2A6NCE7 125 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 GGNBP1Q5YKI7 109 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 FAM109BQ6ICB4 259 aaPredicted RBP12.2□□□□□ -0.46
COL4A1-201ENST00000375820 TIPARPQ7Z3E1 657 aaKnown RBP12.2□□□□□ -0.46
COL4A1-201ENST00000375820 SPEM1Q8N4L4 309 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 MAP1LC3BQ9GZQ8 125 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 AUP1Q9Y679 476 aa12.2□□□□□ -0.46
COL4A1-201ENST00000375820 TRAV1-2A0A0B4J238 106 aa12.19□□□□□ -0.46
COL4A1-201ENST00000375820 HIST1H1DP16402 221 aaKnown RBP12.19□□□□□ -0.46
COL4A1-201ENST00000375820 TOMM34Q15785 309 aaPredicted RBP12.19□□□□□ -0.46
COL4A1-201ENST00000375820 TRAT1Q6PIZ9 186 aa12.19□□□□□ -0.46
COL4A1-201ENST00000375820 SEZ6L2Q6UXD5 910 aa12.19□□□□□ -0.46
COL4A1-201ENST00000375820 OR10AC1Q8NH08 325 aa12.19□□□□□ -0.46
COL4A1-201ENST00000375820 PRDM7Q9NQW5 492 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms