RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CLDN22Q8N7P3 220 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 OR4C16Q8NGL9 310 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 BIRC7Q96CA5 298 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SLAMF8Q9P0V8 285 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 CBLCQ9ULV8 474 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 ABCA8O94911 1581 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 LOC100289279A0A1B0GTE1 492 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 BLACEA4D250 179 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 UMAD1C9J7I0 102 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 CD5LO43866 347 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 GPX5O75715 221 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 COX5AP20674 150 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 PRDX2P32119 198 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 GMPRP36959 345 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SLC37A1P57057 533 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SPHARQ15513 63 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 TMEM64Q6YI46 380 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 OR5AP2Q8NGF4 316 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 OR5A1Q8NGJ0 315 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 OSR1Q8TAX0 266 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 VN1R17PQ8TDU5 208 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 NEIL2Q969S2 332 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SLCO4A1Q96BD0 722 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 DNAJC19Q96DA6 116 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 GATA5Q9BWX5 397 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 JPT2Q9H910 190 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 C20orf141Q9NUB4 165 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 WIPI2Q9Y4P8 454 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 INSIG2Q9Y5U4 225 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 IQSEC2Q5JU85 1478 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 KRBA1A5PL33 1030 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SCAMP2O15127 329 aaKnown RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 TBXA2RP21731 343 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 OPRD1P41143 372 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 TRMT12Q53H54 448 aaKnown RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 OR10J3Q5JRS4 329 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 FAM27D1Q5T7N8 215 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 OR5H6Q8NGV6 325 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 DUX3Q96PT4 197 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 BCL7BQ9BQE9 202 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 PIMREGQ9BSJ6 248 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 HILPDAQ9Y5L2 63 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 TP53BP1Q12888 1972 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 DUXBA0A1W2PPF3 345 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 C7orf77A4D0Y5 90 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 H3BP45 60 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 DNAJB5O75953 348 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 KRASP01116 189 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 RPEL1Q2QD12 228 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 CXorf66Q5JRM2 361 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 FUNDC1Q8IVP5 155 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 LRRC56Q8IYG6 542 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SLC39A11Q8N1S5 342 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 EDARADDQ8WWZ3 215 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 RND1Q92730 232 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 PERPQ96FX8 193 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SCGB3A1Q96QR1 104 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 CGREF1Q99674 301 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 FKBP11Q9NYL4 201 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 DHCR7Q9UBM7 475 aaKnown RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 FBXW11Q9UKB1 542 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 E9PCH4 1651 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 VIRMAQ69YN4 1812 aaKnown RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 TULP4Q9NRJ4 1543 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 CSO75390 466 aaKnown RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 ATP5J2P56134 94 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 CKS1BP61024 79 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 RIGQ13278 110 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 TBR1Q16650 682 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 TMEM215Q68D42 235 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 RXFP4Q8TDU9 374 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SERGEFQ9UGK8 458 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 F11RQ9Y624 299 aaKnown RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SMIM28A0A1B0GU29 152 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 FCGR3BO75015 233 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 UTS2O95399 124 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 HAND1O96004 215 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 SLC35E2P0CK97 266 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 NME1P15531 152 aaKnown RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 TPSB2P20231 275 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 CCR5P51681 352 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 UCP3P55916 312 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 CLDN20P56880 219 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 RACK1P63244 317 aaKnown RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 PITX1P78337 314 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 ID3Q02535 119 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 IHHQ14623 411 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 TPSAB1Q15661 275 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 C1orf185Q5T7R7 199 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 AFMIDQ63HM1 303 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 ABHD17CQ6PCB6 329 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 FBXO46Q6PJ61 603 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-202ENST00000375405 MUS81Q96NY9 551 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 DOK1Q99704 481 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 MAP1LC3AQ9H492 121 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 FSCN3Q9NQT6 498 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 PTPRQQ9UMZ3 2332 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 FREM1Q5H8C1 2179 aa4.18□□□□□ -1.74
SCN1A-202ENST00000375405 IQGAP3Q86VI3 1631 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 FITM1A5D6W6 292 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms