RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SLC22A4Q9H015 551 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 HIPK2Q9H2X6 1198 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CACYBPQ9HB71 228 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 LIN7CQ9NUP9 197 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 TMEM100Q9NV29 134 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 MALT1Q9UDY8 824 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 OPN4Q9UHM6 478 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 MRPS33Q9Y291 106 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 OR10H1Q9Y4A9 318 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 LOXL2Q9Y4K0 774 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 DNAH6Q9C0G6 4158 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 HUWE1Q7Z6Z7 4374 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 ZFYVE26Q68DK2 2539 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CR1P17927 2039 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SPTBN1Q01082 2364 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 ZNF724A8MTY0 619 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 C11orf98E9PRG8 122 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 H3BSH0 61 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 TRIM77I1YAP6 450 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 EEF1E1O43324 174 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 PROP1O75360 226 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CD3DP04234 171 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SPARCP09486 303 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ZNF35P13682 527 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ADCYAP1P18509 176 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 MYL12AP19105 171 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CNR1P21554 472 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 GIFP27352 417 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CCKARP32238 428 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 DNASE1L1P49184 302 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CENPAP49450 140 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 RPS27AP62979 156 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 POU3F1Q03052 451 aaPredicted RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 RASGEF1BQ0VAM2 473 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 EIF2B1Q14232 305 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 PON3Q15166 354 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 TAB1Q15750 504 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 EXT1Q16394 746 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SRSF7Q16629 238 aaKnown RBP eCLIP1.95□□□□□ -2.1
VPS54-202ENST00000354504 MICBQ29980 383 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 GLYATL3Q5SZD4 288 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 IDNKQ5T6J7 187 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 LCN1P1Q5VSP4 162 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 PRAMEF20Q5VT98 475 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ELP2Q6IA86 826 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 OR10K2Q6IF99 312 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 MZT2BQ6NZ67 158 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 RPUSD3Q6P087 351 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 TEX261Q6UWH6 196 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 DHRS11Q6UWP2 260 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 FAM131AQ6UXB0 335 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 Q6YL49 198 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SLC29A4Q7RTT9 530 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 TCF23Q7RTU1 214 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 NUFIP2Q7Z417 695 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 ZSCAN2Q7Z7L9 614 aaPredicted RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 SLC25A42Q86VD7 318 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SERPINA12Q8IW75 414 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ZNF561Q8N587 486 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 TMEM217Q8N7C4 229 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 TMEM185AQ8NFB2 350 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 OR51T1Q8NGJ9 327 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 LILRB1Q8NHL6 650 aaPredicted RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 LHFPL5Q8TAF8 219 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ABHD3Q8WU67 409 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SLC25A43Q8WUT9 341 aaPredicted RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 CAPSLQ8WWF8 208 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 GIMAP1Q8WWP7 306 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 FAM3DQ96BQ1 224 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 AIFM2Q9BRQ8 373 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 DPCDQ9BVM2 203 aaPredicted RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 KRTAP9-8Q9BYQ0 159 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 MED9Q9NWA0 146 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ATPIF1Q9UII2 106 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 NXT1Q9UKK6 140 aaKnown RBP1.95□□□□□ -2.1
VPS54-202ENST00000354504 RARRES3Q9UL19 164 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 NUBP2Q9Y5Y2 271 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 U3KQ87 197 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 APCP25054 2843 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 COL6A6A6NMZ7 2263 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ICE1Q9Y2F5 2266 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 MED13LQ71F56 2210 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 DNAH2Q9P225 4427 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 TRBV6-6A0A0A6YYG2 114 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CLEC18AA5D8T8 446 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SULT1C2O00338 296 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 P2RY10O00398 339 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 PHYHO14832 338 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CASKO14936 926 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 RGS5O15539 181 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 FABP7O15540 132 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 FLRT2O43155 660 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 FGF16O43320 207 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 ATP6V1G1O75348 118 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 CBR3O75828 277 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 WDPCPO95876 746 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 IGKV3-15P01624 115 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 OPN1LWP04000 364 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 SERPINA7P05543 415 aa1.95□□□□□ -2.1
VPS54-202ENST00000354504 QDPRP09417 244 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms