RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 BLMHQ13867 455 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 AVPI1Q5T686 147 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 TPRA1Q86W33 373 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 NR2C2APQ86WQ0 139 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 OR4D6Q8NGJ1 314 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 SEH1LQ96EE3 360 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 TIMD4Q96H15 378 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 CEP19Q96LK0 163 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 PIMREGQ9BSJ6 248 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 BPESC1Q9GZL8 116 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 SMURF1Q9HCE7 757 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 PPIAL4AQ9Y536 164 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 V9GY05 133 aa18.61■□□□□ 0.57
SDC3-202ENST00000339394 CHD3Q12873 2000 aaKnown RBP18.6■□□□□ 0.57
SDC3-202ENST00000339394 GLRA1P23415 457 aa18.6■□□□□ 0.57
SDC3-202ENST00000339394 ERVK11-1P61568 191 aa18.6■□□□□ 0.57
SDC3-202ENST00000339394 BTG1P62324 171 aa18.6■□□□□ 0.57
SDC3-202ENST00000339394 ZMYND11Q15326 602 aa18.6■□□□□ 0.57
SDC3-202ENST00000339394 SAXO1Q8IYX7 474 aa18.6■□□□□ 0.57
SDC3-202ENST00000339394 PXT1Q8NFP0 134 aa18.6■□□□□ 0.57
SDC3-202ENST00000339394 RAB1CQ92928 201 aa18.6■□□□□ 0.57
SDC3-202ENST00000339394 SMIM30A4D0T7 59 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 TRAPPC2LH3BP13 241 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 CDRT1O95170 752 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 CD80P33681 288 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 MXD1Q05195 221 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 C1orf100Q5SVJ3 147 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 ASCL4Q6XD76 172 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 DEFB108BQ8NET1 73 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 DYSFO75923 2080 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 OOEPA6NGQ2 149 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 VWC2LB2RUY7 222 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 KDM4BO94953 1096 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 IGHV2-70P01814 119 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 SFTPBP07988 381 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 CLEC2LP0C7M8 214 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 BCL3P20749 454 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 NR4A2P43354 598 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 WFDC11Q8NEX6 87 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 Q96MF0 132 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 S100A13Q99584 98 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 PLGRKTQ9HBL7 147 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 TMEM165Q9HC07 324 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 HES4Q9HCC6 221 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 RBFOX1Q9NWB1 397 aaKnown RBP18.59■□□□□ 0.57
SDC3-202ENST00000339394 RASL12Q9NYN1 266 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 ING4Q9UNL4 249 aa18.59■□□□□ 0.57
SDC3-202ENST00000339394 MRPS28Q9Y2Q9 187 aaKnown RBP18.59■□□□□ 0.57
SDC3-202ENST00000339394 LGALS8O00214 317 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 SLC22A1O15245 554 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 NXPH2O95156 264 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 FSTL3O95633 263 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 HTR2CP28335 458 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 TMBIM6P55061 237 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 CAV3P56539 151 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 MICBQ29980 383 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 TEX36Q5VZQ5 186 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 AWAT2Q6E213 333 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 FAM166AQ6J272 317 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 GLIPR1L1Q6UWM5 242 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 LRRC28Q86X40 367 aaPredicted RBP18.58■□□□□ 0.56
SDC3-202ENST00000339394 Q8IYB0 196 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 OR6M1Q8NGM8 313 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 RAB2BQ8WUD1 216 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 ELL3Q9HB65 397 aaPredicted RBP18.58■□□□□ 0.56
SDC3-202ENST00000339394 CEPT1Q9Y6K0 416 aa18.58■□□□□ 0.56
SDC3-202ENST00000339394 ZNF469Q96JG9 3925 aaPredicted RBP18.57■□□□□ 0.56
SDC3-202ENST00000339394 IGHV3OR15-7A0A075B7D8 119 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 A0A0G2JK05 382 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 ISPDA4D126 451 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 SLC17A2O00624 439 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 MDH2P40926 338 aaKnown RBP18.57■□□□□ 0.56
SDC3-202ENST00000339394 RSU1Q15404 277 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 ACP7Q6ZNF0 438 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 FAM90A1Q86YD7 464 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 OR10K1Q8NGX5 313 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 METTL9Q9H1A3 318 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 DNAJB11Q9UBS4 358 aa18.57■□□□□ 0.56
SDC3-202ENST00000339394 PRRC2AP48634 2157 aaKnown RBP18.57■□□□□ 0.56
SDC3-202ENST00000339394 TRAV38-1A0A0B4J264 116 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 IFITM5A6NNB3 132 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 NOTOA8MTQ0 251 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 CALCBP10092 127 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 MUC1P15941 1255 aaPredicted RBP18.56■□□□□ 0.56
SDC3-202ENST00000339394 RPS19P39019 145 aaKnown RBP18.56■□□□□ 0.56
SDC3-202ENST00000339394 OR5T2Q8NGG2 359 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 TBC1D15Q8TC07 691 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 SLC25A28Q96A46 364 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 C1orf147Q96MC9 270 aaPredicted RBP18.56■□□□□ 0.56
SDC3-202ENST00000339394 NLKQ9UBE8 527 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 TEX15Q9BXT5 2789 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 OTOGQ6ZRI0 2925 aa18.56■□□□□ 0.56
SDC3-202ENST00000339394 SLC25A16P16260 332 aa18.55■□□□□ 0.56
SDC3-202ENST00000339394 SERPINB10P48595 397 aa18.55■□□□□ 0.56
SDC3-202ENST00000339394 CLDN12P56749 244 aa18.55■□□□□ 0.56
SDC3-202ENST00000339394 SMIM21Q3B7S5 101 aa18.55■□□□□ 0.56
SDC3-202ENST00000339394 ZNF404Q494X3 552 aa18.55■□□□□ 0.56
SDC3-202ENST00000339394 SLC22A6Q4U2R8 563 aa18.55■□□□□ 0.56
SDC3-202ENST00000339394 HES5Q5TA89 166 aa18.55■□□□□ 0.56
SDC3-202ENST00000339394 FAM58AQ8N1B3 248 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms