RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 HIKESHIQ53FT3 197 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 SPSB3Q6PJ21 355 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 C6orf201Q7Z4U5 140 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF705GA8MUZ8 300 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 K7N7A8 449 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 PTBP3O95758 552 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 SRP19P09132 144 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 OR5AC1P0C628 307 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 PHLDA2Q53GA4 152 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 PLA2G2FQ9BZM2 168 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 SLC25A31Q9H0C2 315 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 DUSP15Q9H1R2 295 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 ELL3Q9HB65 397 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 MCTS1Q9ULC4 181 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 TMED7-TICAM2A0A0A6YYA0 188 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 FAM221AA4D161 298 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 SCAF4O95104 1147 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 MMP16P51512 607 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 FXYD4P59646 89 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 SUMF1Q8NBK3 374 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 OR2G3Q8NGZ4 309 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 OR10J5Q8NHC4 309 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 KCNG3Q8TAE7 436 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 C11orf40Q8WZ69 217 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 PLEKHA2Q9HB19 425 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 FOXD3Q9UJU5 478 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 HSF4Q9ULV5 492 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 SMCO3A2RU48 225 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 FAM24AA6NFZ4 105 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 TLCD2A6NGC4 264 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 A8MWP6 167 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 E5RGE8 158 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 TNFSF12O43508 249 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 DXOO77932 396 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF17P17021 662 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 PIGPP57054 158 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 SLC37A1P57057 533 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF880Q6PDB4 577 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 KLHL24Q6TFL4 600 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 MMABQ96EY8 250 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 LIN37Q96GY3 246 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 SHDQ96IW2 340 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 OR10A2Q9H208 303 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 GPR84Q9NQS5 396 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 KCNIP3Q9Y2W7 256 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 NSG2Q9Y328 171 aa11.8□□□□□ -0.52
CCDC88C-201ENST00000331194 IGKV1-9A0A0C4DH69 117 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 OPN1LWP04000 364 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 GUSBP08236 651 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 DBHP09172 617 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 FUT3P21217 361 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 CDAP32320 146 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 OPRM1P35372 400 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 COTL1Q14019 142 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 PRTGQ2VWP7 1150 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 BRICD5Q6PL45 260 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 PRR18Q8N4B5 295 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 RNF133Q8WVZ7 376 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 ARHGAP21Q5T5U3 1957 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 A6NCN8 305 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 E9PLN8 166 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 IFNL4K9M1U5 179 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 IL33O95760 270 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 IFNA10P01566 189 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 GZMBP10144 247 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 OGFOD3Q6PK18 319 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 RHBDD1Q8TEB9 315 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 FAM210BQ96KR6 192 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 BCO1Q9HAY6 547 aa11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 NXT1Q9UKK6 140 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-201ENST00000331194 A0A0J9YY10 115 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 C9J4A7 227 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 MSTNO14793 375 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 GPR137BO60478 399 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 NXPH3O95157 252 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 ONECUT2O95948 504 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 ATP6V0CP27449 155 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 RUNX1Q01196 453 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 POU3F1Q03052 451 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 LBHQ53QV2 105 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 LRRC18Q8N456 261 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 OR5L1Q8NGL2 311 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 FGF14Q92915 247 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 CCNL2Q96S94 520 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 PADI1Q9ULC6 663 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 TMED3Q9Y3Q3 217 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 NSG1A0A0A6YYJ2 146 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 MS4A18H0YCH9 400 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 ADAM10O14672 748 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 GP1BBP13224 206 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 MMP9P14780 707 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 GABRR1P24046 479 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 FOXO1Q12778 655 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 ICAM4Q14773 271 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 MS4A18Q3C1V0 323 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 OR11L1Q8NGX0 322 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 DYRK2Q92630 601 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 PECRQ9BY49 303 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 CYP8B1Q9UNU6 501 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms