RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SEH1LQ96EE3 360 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 HINT3Q9NQE9 182 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 GPR55Q9Y2T6 319 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 PHLDA3Q9Y5J5 127 aa6.87□□□□□ -1.31
LIMCH1-201ENST00000313860 ERCC6L2Q5T890 1561 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 MRPL24Q96A35 216 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 TMEM186Q96B77 213 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 C14orf144Q96I85 54 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 SLC45A3Q96JT2 553 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 RANBP9Q96S59 729 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 FEVQ99581 238 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 STRADBQ9C0K7 418 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 POPDC3Q9HBV1 291 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 GFRA3O60609 400 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 NPIPB7O75200 414 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 PNRC1Q12796 327 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 PNLIPRP3Q17RR3 467 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 MPV17LQ2QL34 196 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 DOK1Q99704 481 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 DEC1Q9P2X7 70 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 TSPOAP1O95153 1857 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 hCG_1818297A0A087WSY0 165 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 A0A1W2PQH9 124 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 CGB1A6NKQ9 187 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 PRSS47A8MTI9 375 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 FGF17O60258 216 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 TDGF1P13385 188 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 SUOXP51687 545 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 HIST1H1AQ02539 215 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 AWAT1Q58HT5 328 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 CFAP161Q6P656 301 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 FBXO16Q8IX29 292 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 BAP18Q8IXM2 172 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 VN1R1Q9GZP7 353 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 CACNG5Q9UF02 275 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 ARAP3Q8WWN8 1544 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 F8WEM9 126 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 SDCBPO00560 298 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 HLA-DQA1P01909 254 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 FURINP09958 794 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 RTP5Q14D33 572 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 PLPPR5Q32ZL2 321 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 TRMT12Q53H54 448 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 DCAF10Q5QP82 559 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 DLK2Q6UY11 383 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 MUC20Q8N307 709 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 DYNLRB2Q8TF09 96 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 BOD1Q96IK1 185 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 MYOZ1Q9NP98 299 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 ROBO2Q9HCK4 1378 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 KCNE1BA0A087WTH5 132 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 INS-IGF2F8WCM5 200 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 INSP01308 110 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 MAPTP10636 758 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 TFPI2P48307 235 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 ZNF680Q8NEM1 530 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 ADAMTS16Q8TE57 1224 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 DLX4Q92988 240 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 SNRNP40Q96DI7 357 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 PLPPR2Q96GM1 343 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 NABP2Q9BQ15 211 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 TMEM204Q9BSN7 226 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 ANGPTL4Q9BY76 406 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 SPNS1Q9H2V7 528 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 PRSS16Q9NQE7 514 aa6.86□□□□□ -1.31
LIMCH1-201ENST00000313860 MLH3Q9UHC1 1453 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 GLTPD2A6NH11 291 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 DPM2O94777 84 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 BRS3P32247 399 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 KIR2DL3P43628 341 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 RPS25P62851 125 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 GOLT1AQ6ZVE7 132 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 TAS1R1Q7RTX1 841 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 BTLAQ7Z6A9 289 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 OR52B6Q8NGF0 335 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 GTF3AQ92664 365 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 SCAMP4Q969E2 229 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 OR51B2Q9Y5P1 312 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 EDC4Q6P2E9 1401 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 AGLP35573 1532 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 PPIAL4EA0A075B759 164 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 A8MWV9 139 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 TAPBPO15533 448 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 PPIAL4FP0DN26 164 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 PSG1P11464 419 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 CORO1AP31146 461 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 CKS2P33552 79 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 CLDN20P56880 219 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 SIRPAP78324 504 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 FUT7Q11130 342 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 FAM71CQ8NEG0 241 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 OR4P4Q8NGL7 312 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 GALPQ9UBC7 116 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 ANAPC10Q9UM13 185 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 KLHDC2Q9Y2U9 406 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 PPIAL4AQ9Y536 164 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 TMEM8BA6NDV4 472 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 ZNF98A6NK75 572 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 BCL2L11O43521 198 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 HRO43593 1189 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms