RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 DYNC1I2Q13409 638 aaKnown RBP11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 DCTN2Q13561 401 aaKnown RBP11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 FAM98BQ52LJ0 330 aaKnown RBP11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 CLVS2Q5SYC1 327 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 PIGWQ7Z7B1 504 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 OR51E1Q8TCB6 317 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 GIPC3Q8TF64 312 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 ASB17Q8WXJ9 295 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 NIPSNAP1Q9BPW8 284 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 TEX12Q9BXU0 123 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 PBOV1Q9GZY1 135 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 HES4Q9HCC6 221 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 GPR84Q9NQS5 396 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 ARL8BQ9NVJ2 186 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 OR14J1Q9UGF5 321 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 NUFIP1Q9UHK0 495 aaKnown RBP11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 TMEM14AQ9Y6G1 99 aa11.88□□□□□ -0.51
CCDC88B-201ENST00000301897 DLGAP1O14490 977 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 SYNGR1O43759 233 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 E2F6O75461 281 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 IGLV3-1P01715 115 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 CHRM2P08172 466 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 IGHV1-8P0DP01 117 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 PIPP12273 146 aaPredicted RBP11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 MPZP25189 248 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 MNAT1P51948 309 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 RPS7P62081 194 aaKnown RBP11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 BLCAPP62952 87 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 MEF2CQ06413 473 aaPredicted RBP11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 IL18R1Q13478 541 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 ZBTB49Q6ZSB9 765 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 GDPD3Q7L5L3 318 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 CENPVQ7Z7K6 275 aaPredicted RBP11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 CPOQ8IVL8 374 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 ARHGAP24Q8N264 748 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 ASCC1Q8N9N2 400 aaKnown RBP11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 CAPSLQ8WWF8 208 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 ZNF488Q96MN9 340 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 FEVQ99581 238 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 DNAJB9Q9UBS3 223 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 KLHDC2Q9Y2U9 406 aa11.87□□□□□ -0.51
CCDC88B-201ENST00000301897 TCRBV4S1A1TA0A5B7 111 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 PQLC2LA1A4F0 135 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 DHRS7CA6NNS2 312 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 FAM90A22PA8MWA6 464 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 E9PQ18 207 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 DNAJC8O75937 253 aaPredicted RBP11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 CEBPDP49716 269 aaPredicted RBP11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 RIDAP52758 137 aaKnown RBP11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 EDDM3BP56851 147 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 ROM1Q03395 351 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 SLC34A1Q06495 639 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 GINS1Q14691 196 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 DEFB121Q5J5C9 76 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 TMEM42Q69YG0 159 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 ZNF679Q8IYX0 411 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 OR4X2Q8NGF9 303 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 NDNFQ8TB73 568 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 DPF1Q92782 380 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 ZNF714Q96N38 554 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 TEAD3Q99594 435 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 PKIBQ9C010 78 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 FAM107BQ9H098 131 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 MOB1AQ9H8S9 216 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 ZNF556Q9HAH1 456 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 SLC22A13Q9Y226 551 aa11.86□□□□□ -0.51
CCDC88B-201ENST00000301897 hADV38S2A0JD32 116 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 ARHGDIBP52566 201 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 ACTR3P61158 418 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 ERVK11-1P61568 191 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 ESRRGP62508 458 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 CD69Q07108 199 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 IL24Q13007 206 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 DMRTC1Q5HYR2 192 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 ASRGL1Q7L266 308 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 DHFR2Q86XF0 187 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 OR8H2Q8N162 312 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 WWC2-AS2Q96NR7 200 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 LIN7BQ9HAP6 207 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 HILPDAQ9Y5L2 63 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 LINC00312Q9Y6C7 94 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 SESN1Q9Y6P5 492 aa11.85□□□□□ -0.51
CCDC88B-201ENST00000301897 ZNF737O75373 536 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 RAP2AP10114 183 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 HOXB6P17509 224 aaKnown RBP11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 SLC2A5P22732 501 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 BRS3P32247 399 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 ACTA2P62736 377 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 ACTG2P63267 376 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 ACTC1P68032 377 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 ACTA1P68133 377 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 COL10A1Q03692 680 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 EGFEM1PQ0D2K5 195 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 TRIM25Q14258 630 aaKnown RBP11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 TMEM95Q3KNT9 176 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 LDLRAD2Q5SZI1 272 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 C11orf87Q6NUJ2 197 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 Q6ZS46 218 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 ZNF676Q8N7Q3 588 aa11.84□□□□□ -0.51
CCDC88B-201ENST00000301897 SNX22Q96L94 193 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms