RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SLC9A3R2Q15599 337 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 KRBOX4Q5JUW0 171 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 PRAMEF5Q5TYX0 476 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 PRAMEF6Q5VXH4 476 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 ETFRF1Q6IPR1 90 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 ZNF546Q86UE3 836 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 FAM90A1Q86YD7 464 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 ANKRD12Q6UB98 2062 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 E5RGE8 158 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 OXA1LQ15070 435 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 TAF9Q16594 264 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 OR13C8Q8NGS7 320 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 TIMP4Q99727 224 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 SAP30LQ9HAJ7 183 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 NSG2Q9Y328 171 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 A0A1W2PPV4 95 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 NKX2-1P43699 371 aaPredicted RBP11.96□□□□□ -0.49
LDLR-201ENST00000252444 IAH1Q2TAA2 248 aaPredicted RBP11.96□□□□□ -0.49
LDLR-201ENST00000252444 FDCSPQ8NFU4 85 aa11.96□□□□□ -0.49
LDLR-201ENST00000252444 ZNF385AQ96PM9 386 aaKnown RBP11.96□□□□□ -0.49
LDLR-201ENST00000252444 SLIRPQ9GZT3 109 aaKnown RBP11.96□□□□□ -0.49
LDLR-201ENST00000252444 OR4A4PQ8NGN8 299 aa11.96□□□□□ -0.5
LDLR-201ENST00000252444 ZNF629Q9UEG4 869 aaPredicted RBP11.96□□□□□ -0.5
LDLR-201ENST00000252444 COPS3Q9UNS2 423 aa11.96□□□□□ -0.5
LDLR-201ENST00000252444 TRDCB7Z8K6 153 aa11.96□□□□□ -0.5
LDLR-201ENST00000252444 ENSAO43768 121 aaKnown RBP11.96□□□□□ -0.5
LDLR-201ENST00000252444 GOSR1O95249 250 aa11.96□□□□□ -0.5
LDLR-201ENST00000252444 UCP2P55851 309 aa11.96□□□□□ -0.5
LDLR-201ENST00000252444 C2orf50Q96LR7 162 aa11.96□□□□□ -0.5
LDLR-201ENST00000252444 DDOQ99489 341 aa11.96□□□□□ -0.5
LDLR-201ENST00000252444 FAM96BQ9Y3D0 163 aa11.96□□□□□ -0.5
LDLR-201ENST00000252444 STRAPQ9Y3F4 350 aaKnown RBP11.96□□□□□ -0.5
LDLR-201ENST00000252444 TMEM235A6NFC5 223 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 A8MXE2 369 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 KLF7O75840 302 aaPredicted RBP11.95□□□□□ -0.5
LDLR-201ENST00000252444 NTNG2Q96CW9 530 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 LSM2Q9Y333 95 aaKnown RBP11.95□□□□□ -0.5
LDLR-201ENST00000252444 MYOFQ9NZM1 2061 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 CENPVL1A0A0U1RR11 272 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 B9A039 149 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 IFNA4P05014 189 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 CELA2AP08217 269 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 KITLGP21583 273 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 NFYBP25208 207 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 FCGR2CP31995 323 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 OR13C5Q8NGS8 318 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 OR13D1Q8NGV5 346 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 RDH5Q92781 318 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 BORCS7Q96B45 105 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 TAS2R3Q9NYW6 316 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 MYO10Q9HD67 2058 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 ZNF626Q68DY1 528 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 CCDC144NLQ6NUI1 221 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 OR52N4Q8NGI2 321 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 TMEM56Q96MV1 263 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 RAB18Q9NP72 206 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 RNF115Q9Y4L5 304 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 M0QYG6 137 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 HOXB5P09067 269 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 HNF1AP20823 631 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 BRS3P32247 399 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 DGCR2P98153 550 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 H3F3CQ6NXT2 135 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 SHARPINQ9H0F6 387 aa11.95□□□□□ -0.5
LDLR-201ENST00000252444 IGKV3D-15A0A087WSY6 115 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 F6UZH7 168 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 RPL36A-HNRNPH2H7BZ11 118 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 HSD17B6O14756 317 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 NDUFB6O95139 128 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 GNB3P16520 340 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 RAB5CP51148 216 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 PSG4Q00888 419 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 CXorf67Q86X51 503 aaPredicted RBP11.94□□□□□ -0.5
LDLR-201ENST00000252444 MARS2Q96GW9 593 aaKnown RBP11.94□□□□□ -0.5
LDLR-201ENST00000252444 PECRQ9BY49 303 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 UPK3AO75631 287 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 AGFG2O95081 481 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 CTSDP07339 412 aaPredicted RBP11.94□□□□□ -0.5
LDLR-201ENST00000252444 PRF1P14222 555 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 C1orf100Q5SVJ3 147 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 ZNF385CQ66K41 422 aaPredicted RBP11.94□□□□□ -0.5
LDLR-201ENST00000252444 FAM122BQ7Z309 247 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 DPCDQ9BVM2 203 aaPredicted RBP11.94□□□□□ -0.5
LDLR-201ENST00000252444 HES7Q9BYE0 225 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 C1RLQ9NZP8 487 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 ING1Q9UK53 422 aaPredicted RBP11.94□□□□□ -0.5
LDLR-201ENST00000252444 PPP1R3CQ9UQK1 317 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 ARPC5O15511 151 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 CST4P01036 141 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 PDZK1IP1Q13113 114 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 PTDSS2Q9BVG9 487 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 HAND1O96004 215 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 OR10A3P58181 314 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 OR8G5Q8NG78 346 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 OR5AP2Q8NGF4 316 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 SLC7A10Q9NS82 523 aa11.94□□□□□ -0.5
LDLR-201ENST00000252444 TRBV5-7A0A0A0MS05 114 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 TGFBR3LH3BV60 316 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 TLE1Q04724 770 aa11.93□□□□□ -0.5
LDLR-201ENST00000252444 SFRP5Q5T4F7 317 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms