RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 B3GALT2O43825 422 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 GUSBP08236 651 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 FREM3P0C091 2139 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 MAS1LP35410 378 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 RPS4XP62701 263 aaKnown RBP12.94□□□□□ -0.34
PTPRA-201ENST00000216877 GNB2P62879 340 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 FHL1Q13642 323 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 TMEM41BQ5BJD5 291 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 PHF19Q5T6S3 580 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 SYT13Q7L8C5 426 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 S100A7AQ86SG5 101 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 SMIM7Q9BQ49 75 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 FAM103A1Q9BTL3 118 aaKnown RBP12.94□□□□□ -0.34
PTPRA-201ENST00000216877 ABHD6Q9BV23 337 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 TMEM59Q9BXS4 323 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 LRP12Q9Y561 859 aa12.94□□□□□ -0.34
PTPRA-201ENST00000216877 SCDO00767 359 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 NUDT21O43809 227 aaKnown RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 ACAA2P42765 397 aaKnown RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 ICAM4Q14773 271 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 RTP5Q14D33 572 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 VAMP3Q15836 100 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 SMIM15Q7Z3B0 74 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 LGI3Q8N145 548 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 DTWD2Q8NBA8 298 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 DYRK2Q92630 601 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 OR1A2Q9Y585 309 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 HMGB3O15347 200 aaKnown RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 NXPH2O95156 264 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 DDAH2O95865 285 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 HPNP05981 417 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 CA3P07451 260 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 GABRR1P24046 479 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 CST5P28325 142 aaPredicted RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 GALR1P47211 349 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 RBX1P62877 108 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 MCEMP1Q8IX19 187 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 FAM71F1Q96KD3 344 aaPredicted RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 AURKAIP1Q9NWT8 199 aaPredicted RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 LRIT1Q9P2V4 623 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 DEC1Q9P2X7 70 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 VAX2Q9UIW0 290 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 MRPS28Q9Y2Q9 187 aaKnown RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 BLVRBP30043 206 aaPredicted RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 ARF3P61204 181 aaPredicted RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 ARF1P84077 181 aaKnown RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 GPM6BQ13491 265 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 SLC35E3Q7Z769 313 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 EMG1Q92979 244 aaKnown RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 FAM122AQ96E09 287 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 BTF3L4Q96K17 158 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 ALKBH7Q9BT30 221 aaPredicted RBP12.93□□□□□ -0.34
PTPRA-201ENST00000216877 SAMD10Q9BYL1 202 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 KIAA1456Q9P272 454 aa12.93□□□□□ -0.34
PTPRA-201ENST00000216877 LOC101059948A0A1B0GTJ6 334 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 H3BP45 60 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 APBB3O95704 486 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 IL33O95760 270 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 PIGPP57054 158 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 ABLIM2Q6H8Q1 611 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 C16orf82Q7Z2V1 217 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 CALHM1Q8IU99 346 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 LYPD6BQ8NI32 183 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 GAL3ST2Q9H3Q3 398 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.92□□□□□ -0.343e-6■■□□□ 13.8
PTPRA-201ENST00000216877 DNAJB12Q9NXW2 375 aaKnown RBP12.92□□□□□ -0.34
PTPRA-201ENST00000216877 SPACA6W5XKT8 324 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 A0A1W2PPV9 198 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 M0QZ24 198 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 CHRM2P08172 466 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 RAB28P51157 221 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 SLC22A24Q8N4F4 322 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 LMLNQ96KR4 655 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 TECTBQ96PL2 329 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 ZNF665Q9H7R5 613 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 TET1Q8NFU7 2136 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 TRBV11-1A0A0K0K1C0 115 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 A8MVM7 634 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 FGF17O60258 216 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 OR5G3P0C626 314 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 HOXC8P31273 242 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 OPRM1P35372 400 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 HIST1H3AP68431 136 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 TPGS2Q68CL5 300 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 RNF144BQ7Z419 303 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 OR52M1Q8NGK5 317 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 OR5C1Q8NGR4 320 aa12.92□□□□□ -0.34
PTPRA-201ENST00000216877 ZNF107Q9UII5 783 aaPredicted RBP12.92□□□□□ -0.34
PTPRA-201ENST00000216877 CDC14CA4D256 554 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 FIGNL2A6NMB9 653 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 CRYABP02511 175 aaKnown RBP12.91□□□□□ -0.34
PTPRA-201ENST00000216877 CT62P0C5K7 136 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 TMEM225BP0DP42 221 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 CMPK1P30085 196 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 KLHL24Q6TFL4 600 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 TMEM256Q8N2U0 113 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 OR4C3Q8NH37 302 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 RNF150Q9ULK6 438 aa12.91□□□□□ -0.34
PTPRA-201ENST00000216877 C19orf53Q9UNZ5 99 aaPredicted RBP12.91□□□□□ -0.34
PTPRA-201ENST00000216877 RP1P56715 2156 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms