RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 KCNE1BA0A087WTH5 132 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 P2RY10O00398 339 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 HPRT1P00492 218 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 HIST1H1EP10412 219 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ZBTB25P24278 435 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 GZMMP51124 257 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM78BQ5VT40 261 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ALKAL1Q6UXT8 129 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 LINC00596Q86U02 117 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 RBMXL3Q8N7X1 1067 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 LPAR4Q99677 370 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF430Q9H8G1 570 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 PLAC1Q9HBJ0 212 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 MBNL1Q9NR56 388 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ALKBH4Q9NXW9 302 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 COL14A1Q05707 1796 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM171A2A8MVW0 826 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 F8VVB4 439 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 F8VWA3 439 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 CORTO00230 105 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 TTRP02766 147 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 PRRT3Q5FWE3 981 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 CYP2G1PQ6ZSU1 146 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 BCDIN3DQ7Z5W3 292 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 C20orf196Q8IYI0 205 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 CLCF1Q9UBD9 225 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 RABAC1Q9UI14 185 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 NRXN3Q9Y4C0 1643 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM272A0A1B0GTI8 110 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 A0A1B0GW15 77 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 C19orf67A6NJJ6 358 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 C11orf94C9JXX5 98 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 IL2RAP01589 272 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 RNASEKQ6P5S7 137 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 KREMEN2Q8NCW0 462 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 CPT1CQ8TCG5 803 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF707Q96C28 371 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 OR2J1Q9GZK6 312 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 TMED7-TICAM2A0A0A6YYA0 188 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 C8AP07357 584 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FUT3P21217 361 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 VIPR2P41587 438 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ELLP55199 621 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 GPR162Q16538 588 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 HOGA1Q86XE5 327 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ETFBKMTQ8IXQ9 262 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 SSUH2Q9Y2M2 353 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 IGSF23A1L1A6 192 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 MMP23AO75900 390 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 PGGT1BP53609 377 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 LIM2P55344 173 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 RPS11P62280 158 aaKnown RBP eCLIP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 DPTQ07507 201 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FUT7Q11130 342 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 RIGQ13278 110 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 SOSTQ9BQB4 213 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 UBE2ZQ9H832 354 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 OCIAD1Q9NX40 245 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 TIMM10BQ9Y5J6 103 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 LIPGQ9Y5X9 500 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 AKAP11Q9UKA4 1901 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FEZF1A0PJY2 475 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 RNF222A6NCQ9 220 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 LINC00869P0C866 280 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 AESQ08117 197 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 SMAD2Q15796 467 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 C6orf132Q5T0Z8 1188 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 CMTM8Q8IZV2 173 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF511Q8NB15 262 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 RNASEH2CQ8TDP1 164 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 SIGMAR1Q99720 223 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 PLA2G12AQ9BZM1 189 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 MTCH1Q9NZJ7 389 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 CITO14578 2027 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 TRBV24-1A0A075B6N3 115 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 RER1O15258 196 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FCMRO60667 390 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 IRF2P14316 349 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 HERVK_113P61574 105 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 EWSR1Q01844 656 aaKnown RBP eCLIP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 FAM57BQ71RH2 274 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 MRPL30Q8TCC3 161 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 VN1R17PQ8TDU5 208 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 NEUROG1Q92886 237 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 TNFRSF14Q92956 283 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ISG20L2Q9H9L3 353 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF256Q9Y2P7 627 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 A0A087WUJ7 227 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 C17orf105B2RV13 164 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 B4E171 279 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 OR2J2O76002 312 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 AVPR2P30518 371 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 ACAA2P42765 397 aaKnown RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 MMABQ96EY8 250 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-220ENST00000641603 SLC25A33Q9BSK2 321 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 C16orf70Q9BSU1 422 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 SLC26A1Q9H2B4 701 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 PIGLQ9Y2B2 252 aa4.18□□□□□ -1.74
SCN1A-220ENST00000641603 IFITM10A6NMD0 228 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 NPIPB7O75200 414 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms