RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 SOX7Q9BT81 388 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 NXF2Q9GZY0 626 aaKnown RBP8.32□□□□□ -1.08
CLN3-261ENST00000637686 PPIL3Q9H2H8 161 aaKnown RBP8.32□□□□□ -1.08
CLN3-261ENST00000637686 TMEM138Q9NPI0 162 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 TMEM106BQ9NUM4 274 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 DCAF16Q9NXF7 216 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 MPC1Q9Y5U8 109 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 DYSFO75923 2080 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 ZANQ9Y493 2812 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 SHISA3A0PJX4 238 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 ANKRD30BLA7E2S9 258 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 AIPO00170 330 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 PRKACBP22694 351 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 ACKR3P25106 362 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 BDKRB2P30411 391 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 RPS19P39019 145 aaKnown RBP8.31□□□□□ -1.08
CLN3-261ENST00000637686 GZMKP49863 264 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 MAB21L1Q13394 359 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 CEP78Q5JTW2 689 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 FAM27D1Q5T7N8 215 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 PRAMEF6Q5VXH4 476 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 GLT8D1Q68CQ7 371 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 ASPHD2Q6ICH7 369 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 MOGAT3Q86VF5 341 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 LYPD6Q86Y78 171 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 CLDND2Q8NHS1 167 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 TIMD4Q96H15 378 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 CMTM3Q96MX0 182 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 ADAT1Q9BUB4 502 aaKnown RBP8.31□□□□□ -1.08
CLN3-261ENST00000637686 SLIRPQ9GZT3 109 aaKnown RBP8.31□□□□□ -1.08
CLN3-261ENST00000637686 MMP27Q9H306 513 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 PPP1R3EQ9H7J1 279 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 GCM1Q9NP62 436 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 YAE1D1Q9NRH1 226 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 PPP1R3CQ9UQK1 317 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 PIGLQ9Y2B2 252 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 WIPI2Q9Y4P8 454 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 V9GY05 133 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 CSPG4Q6UVK1 2322 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 ABCA1O95477 2261 aa8.31□□□□□ -1.08
CLN3-261ENST00000637686 TANC2Q9HCD6 1990 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 TRAV8-7A0A075B6U6 113 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 A0A0G2JK05 382 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 ISPDA4D126 451 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 OR5B21A6NL26 309 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 ANXA2P2A6NMY6 339 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 INAFM1C9JVW0 142 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 GMDSO60547 372 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 NRASP01111 189 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 ZNF16P17020 682 aaPredicted RBP8.3□□□□□ -1.08
CLN3-261ENST00000637686 ATF1P18846 271 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 PMELP40967 661 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 CD200P41217 278 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 MZT1Q08AG7 82 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 C1orf100Q5SVJ3 147 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 FAM166AQ6J272 317 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 SFXN4Q6P4A7 337 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 PEG10Q86TG7 708 aaKnown RBP8.3□□□□□ -1.08
CLN3-261ENST00000637686 CELF2-AS1Q8N7Q2 184 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 SPERTQ8NA61 448 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 HPS1Q92902 700 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 RAB1CQ92928 201 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 MSI2Q96DH6 328 aaKnown RBP8.3□□□□□ -1.08
CLN3-261ENST00000637686 RNF167Q9H6Y7 350 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 METTL17Q9H7H0 456 aaPredicted RBP8.3□□□□□ -1.08
CLN3-261ENST00000637686 TAS2R4Q9NYW5 299 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 ABRACLQ9P1F3 81 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 SLC7A11Q9UPY5 501 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 RHBDD3Q9Y3P4 386 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 NPTNQ9Y639 398 aa8.3□□□□□ -1.08
CLN3-261ENST00000637686 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.29□□□□□ -1.08
CLN3-261ENST00000637686 LOC100289279A0A1B0GTE1 492 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 A0A1W2PPK0 400 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 IFITM5A6NNB3 132 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 FAM157AC9JC47 383 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 TMEM178BH3BS89 294 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 IFNL4K9M1U5 179 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 SLC17A2O00624 439 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 MAGEB3O15480 346 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 ZNF205O95201 554 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 CYB5R3P00387 301 aaPredicted RBP8.29□□□□□ -1.08
CLN3-261ENST00000637686 TGFAP01135 160 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 UBBP0CG47 229 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 CALCBP10092 127 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 FAHP16930 419 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 ADRA2CP18825 462 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 GATA4P43694 442 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 FUT6P51993 359 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 LMO4P61968 165 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 MPPED2Q15777 294 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 CEACAM21Q3KPI0 293 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 ZNF404Q494X3 552 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 LHFPL2Q6ZUX7 228 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 ZDHHC23Q8IYP9 409 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 OR5A2Q8NGI9 324 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 OR6M1Q8NGM8 313 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 OR8S1Q8NH09 359 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 POM121Q96HA1 1249 aa8.29□□□□□ -1.08
CLN3-261ENST00000637686 PAPOLGQ9BWT3 736 aaKnown RBP8.29□□□□□ -1.08
CLN3-261ENST00000637686 ZNF665Q9H7R5 613 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms