RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 KLF3P57682 345 aaPredicted RBP15.7■□□□□ 0.1
CLN3-254ENST00000637050 SNTB1Q13884 538 aaKnown RBP15.7■□□□□ 0.1
CLN3-254ENST00000637050 OR8G1Q15617 311 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 RGS21Q2M5E4 152 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 DNM1P46Q6ZS02 220 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 TMEM200AQ86VY9 491 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 LINC01560Q8TB33 94 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 YIPF5Q969M3 257 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 NICN1Q9BSH3 213 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 TM2D1Q9BX74 207 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 ESRP2Q9H6T0 727 aaKnown RBP15.7■□□□□ 0.1
CLN3-254ENST00000637050 WIPF3A6NGB9 483 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 H0YL77 283 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 GABARAPH6UMI1 98 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 LANCL1O43813 399 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 ZG16O60844 167 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 HTR3BO95264 441 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 CSTBP04080 98 aaKnown RBP15.7■□□□□ 0.1
CLN3-254ENST00000637050 VEGFCP49767 419 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 TRIQKQ629K1 86 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 VHLLQ6RSH7 139 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 SLC22A25Q6T423 547 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 WDR86Q86TI4 376 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 Q8NFD4 153 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 OR10R2Q8NGX6 335 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 OR13G1Q8NGZ3 307 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 PKIBQ9C010 78 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 ZNF442Q9H7R0 627 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 CA10Q9NS85 328 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 DUSP13Q9UII6 198 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 TBC1D24Q9ULP9 559 aa15.7■□□□□ 0.1
CLN3-254ENST00000637050 LRP5LA4QPB2 252 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 CLDN14O95500 239 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 PTHLHP12272 177 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 GTF2F2P13984 249 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 MPZP25189 248 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 MKXQ8IYA7 352 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 SETD6Q8TBK2 473 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 GCDHQ92947 438 aaPredicted RBP15.69■□□□□ 0.1
CLN3-254ENST00000637050 SELENOIQ9C0D9 397 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 AUNIPQ9H7T9 357 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 PCDHB16Q9NRJ7 776 aa15.69■□□□□ 0.1
CLN3-254ENST00000637050 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.68■□□□□ 0.1
CLN3-254ENST00000637050 TUBAL3A6NHL2 446 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 TMEM210A6NLX4 147 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 SFTPBP07988 381 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 CD3GP09693 182 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 DEFA1P59665 94 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 DEFA3P59666 94 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 IL24Q13007 206 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 HACD4Q5VWC8 232 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 HAGHLQ6PII5 290 aaPredicted RBP15.68■□□□□ 0.1
CLN3-254ENST00000637050 ZNF843Q8N446 348 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 SPERTQ8NA61 448 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 POC5Q8NA72 575 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 C19orf18Q8NEA5 215 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 OR10AD1Q8NGE0 317 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 OR56B1Q8NGI3 324 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 OR51T1Q8NGJ9 327 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 OR52I2Q8NH67 350 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 FCAMRQ8WWV6 532 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 MRPL24Q96A35 216 aaKnown RBP15.68■□□□□ 0.1
CLN3-254ENST00000637050 MRPS24Q96EL2 167 aaKnown RBP15.68■□□□□ 0.1
CLN3-254ENST00000637050 PLPPR2Q96GM1 343 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 Q96M66 194 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 SYT3Q9BQG1 590 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 MRPL37Q9BZE1 423 aaKnown RBP15.68■□□□□ 0.1
CLN3-254ENST00000637050 MSL2Q9HCI7 577 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 NBASA2RRP1 2371 aa15.68■□□□□ 0.1
CLN3-254ENST00000637050 FOXI3A8MTJ6 420 aaPredicted RBP15.67■□□□□ 0.1
CLN3-254ENST00000637050 J3QT63 122 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 SYNGR1O43759 233 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 CYB5AP00167 134 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 CPT2P23786 658 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 SELENOVP59797 346 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 ASAH1Q13510 395 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 ZNF260Q3ZCT1 412 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 RNASE12Q5GAN4 147 aaKnown RBP15.67■□□□□ 0.1
CLN3-254ENST00000637050 ELP2Q6IA86 826 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 CHPT1Q8WUD6 406 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 AQP3Q92482 292 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 CXXC4Q9H2H0 198 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 NPDC1Q9NQX5 325 aaPredicted RBP15.67■□□□□ 0.1
CLN3-254ENST00000637050 NKIRAS2Q9NYR9 191 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 MTCH1Q9NZJ7 389 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 RBMX2Q9Y388 322 aaKnown RBP15.67■□□□□ 0.1
CLN3-254ENST00000637050 ATP23Q9Y6H3 246 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.67■□□□□ 0.1
CLN3-254ENST00000637050 MEIOCA2RUB1 952 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 SHISA9B4DS77 424 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 PLA2G10O15496 165 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 SOCS1O15524 211 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 NPBWR2P48146 333 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 TMEM50BP56557 158 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 ZNF154Q13106 437 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 ADAM5Q6NVV9 412 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 DMRTC2Q8IXT2 367 aaPredicted RBP15.67■□□□□ 0.1
CLN3-254ENST00000637050 OSR2Q8N2R0 312 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 C17orf50Q8WW18 174 aa15.67■□□□□ 0.1
CLN3-254ENST00000637050 SLAMF9Q96A28 289 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms