RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 H3BML4 177 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 MFNGO00587 321 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 RAD51DO75771 328 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 IFNA17P01571 189 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 CTSDP07339 412 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-214ENST00000637038 HOXB5P09067 269 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 MSR1P21757 451 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 MST1P26927 711 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 RPL12P30050 165 aaKnown RBP3.51□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF121P58317 390 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-214ENST00000637038 FOXF1Q12946 379 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 RSU1Q15404 277 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 DEFB133Q30KQ1 61 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 MOGAT2Q3SYC2 334 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 C1orf185Q5T7R7 199 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF808Q8N4W9 903 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF321PQ8N8H1 164 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 OR9K2Q8NGE7 335 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 OR5B2Q96R09 309 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 VN1R1Q9GZP7 353 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 TMEM100Q9NV29 134 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 NECAP2Q9NVZ3 263 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 SLC7A11Q9UPY5 501 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 WDFY4Q6ZS81 3184 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 TRAV20A0A0B4J274 112 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 OR2W5A6NFC9 320 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 FAM74A7A6NL05 159 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF850A8MQ14 1090 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 FTCDNL1E5RQL4 147 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 GPR31O00270 319 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 CBR3O75828 277 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 C1QL1O75973 258 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 HTR3BO95264 441 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 KNG1P01042 644 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 HEXAP06865 529 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 COX5BP10606 129 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 CD79AP11912 226 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 ABOP16442 354 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 NME2P22392 152 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 CHATP28329 748 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 GABRA4P48169 554 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 CARD18P57730 90 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 LSM6P62312 80 aaKnown RBP3.51□□□□□ -1.85
SCN1A-214ENST00000637038 VAMP2P63027 116 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 FMODQ06828 376 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 MICBQ29980 383 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 HLA-BQ31612 363 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 FAM74A3Q4VXF1 159 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 AKIRIN2Q53H80 203 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 GPR157Q5UAW9 335 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 CARD17Q5XLA6 110 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 PLXDC2Q6UX71 529 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 FOXRED2Q8IWF2 684 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 PUSL1Q8N0Z8 303 aaKnown RBP3.51□□□□□ -1.85
SCN1A-214ENST00000637038 D2HGDHQ8N465 521 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 IL22RA1Q8N6P7 574 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 BOLLQ8N9W6 283 aaKnown RBP3.51□□□□□ -1.85
SCN1A-214ENST00000637038 SLC38A9Q8NBW4 561 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 SPSB1Q96BD6 273 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 SUCNR1Q9BXA5 334 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 LPAR5Q9H1C0 372 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF286AQ9HBT8 521 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 KCNJ16Q9NPI9 418 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 FGF21Q9NSA1 209 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 MED29Q9NX70 200 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 RARRES3Q9UL19 164 aa3.51□□□□□ -1.85
SCN1A-214ENST00000637038 LSM5Q9Y4Y9 91 aaKnown RBP3.51□□□□□ -1.85
SCN1A-214ENST00000637038 BTBD17A6NE02 478 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 TOX3O15405 576 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-214ENST00000637038 GATCO43716 136 aaKnown RBP3.5□□□□□ -1.85
SCN1A-214ENST00000637038 FBXO24O75426 580 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 SRSF10O75494 262 aaKnown RBP3.5□□□□□ -1.85
SCN1A-214ENST00000637038 PIAS2O75928 621 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 MPZL1O95297 269 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 CNOT4O95628 575 aaKnown RBP3.5□□□□□ -1.85
SCN1A-214ENST00000637038 SMIM6P0DI80 62 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF728P0DKX0 622 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 TMEM225BP0DP42 221 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 TCN2P20062 427 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 PTAFRP25105 342 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 FCGR2CP31995 323 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 SULT1A2P50226 295 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF616Q08AN1 781 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 HYAL4Q2M3T9 481 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 WDR73Q6P4I2 378 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 FAM185AQ8N0U4 392 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 LGI3Q8N145 548 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 ZNF561Q8N587 486 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 GVQW1Q8N7I0 195 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 ADAD2Q8NCV1 583 aaKnown RBP3.5□□□□□ -1.85
SCN1A-214ENST00000637038 OR1L3Q8NH93 324 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 ADAMTS17Q8TE56 1095 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 PPP1R14AQ96A00 147 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 CMBLQ96DG6 245 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 ADAT3Q96EY9 351 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-214ENST00000637038 C12orf57Q99622 126 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 NRIP2Q9BQI9 281 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 EIF5A2Q9GZV4 153 aaKnown RBP3.5□□□□□ -1.85
SCN1A-214ENST00000637038 SLC25A31Q9H0C2 315 aa3.5□□□□□ -1.85
SCN1A-214ENST00000637038 SLC26A1Q9H2B4 701 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms