RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 ST6GALNAC5Q9BVH7 336 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 ANAPC10Q9UM13 185 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 TNRC6AQ8NDV7 1962 aaKnown RBP13.55□□□□□ -0.24
CLN3-251ENST00000636853 MED12LQ86YW9 2145 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 hCG_1807616A0A1W2PRN6 198 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 M0R233 179 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 ZNF35P13682 527 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 CPT2P23786 658 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 RAP2BP61225 183 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 TSPAN5P62079 268 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 RSU1Q15404 277 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 STK11Q15831 433 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 PLCXD3Q63HM9 321 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 COLCA1Q6ZS62 124 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 C6orf201Q7Z4U5 140 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 SPSB4Q96A44 273 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 OCSTAMPQ9BR26 566 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 METTL9Q9H1A3 318 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 CSTBP04080 98 aaKnown RBP13.54□□□□□ -0.24
CLN3-251ENST00000636853 MPZP25189 248 aa13.54□□□□□ -0.24
CLN3-251ENST00000636853 DHRS2Q13268 280 aa13.54□□□□□ -0.24
CLN3-251ENST00000636853 DEFB109BQ30KR1 87 aa13.54□□□□□ -0.24
CLN3-251ENST00000636853 NHLRC3Q5JS37 347 aa13.54□□□□□ -0.24
CLN3-251ENST00000636853 NKAPLQ5M9Q1 402 aa13.54□□□□□ -0.24
CLN3-251ENST00000636853 C11orf88Q6PI97 169 aa13.54□□□□□ -0.24
CLN3-251ENST00000636853 LHFPL2Q6ZUX7 228 aa13.54□□□□□ -0.24
CLN3-251ENST00000636853 ZNF581Q9P0T4 197 aa13.54□□□□□ -0.24
CLN3-251ENST00000636853 ZNF816-ZNF321PA0A0X1KG74 233 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 TBPP20226 339 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 CLN3Q13286 438 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 HIKESHIQ53FT3 197 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 OVCH2Q7RTZ1 564 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 C12orf45Q8N5I9 185 aaPredicted RBP13.53□□□□□ -0.24
CLN3-251ENST00000636853 ST8SIA4Q92187 359 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 Q96M66 194 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 FN3KRPQ9HA64 309 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 MYOZ1Q9NP98 299 aaPredicted RBP13.53□□□□□ -0.24
CLN3-251ENST00000636853 ATPIF1Q9UII2 106 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 SPENQ96T58 3664 aaKnown RBP13.53□□□□□ -0.24
CLN3-251ENST00000636853 IGKV1-12A0A0C4DH73 117 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 ZNF850A8MQ14 1090 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 KRBOX1C9JBD0 128 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 H3BUI4 141 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 IL18BPO95998 194 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 IGKV1D-12P01611 117 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 AMY2BP19961 511 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 NOVA1P51513 510 aaKnown RBP13.53□□□□□ -0.24
CLN3-251ENST00000636853 GK2Q14410 553 aaPredicted RBP13.53□□□□□ -0.24
CLN3-251ENST00000636853 HLXQ14774 488 aaPredicted RBP13.53□□□□□ -0.24
CLN3-251ENST00000636853 TAF9Q16594 264 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 ADAD2Q8NCV1 583 aaKnown RBP13.53□□□□□ -0.24
CLN3-251ENST00000636853 TMPRSS13Q9BYE2 586 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 REG4Q9BYZ8 158 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.53□□□□□ -0.24
CLN3-251ENST00000636853 OPN4Q9UHM6 478 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 SLC7A11Q9UPY5 501 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 SESN1Q9Y6P5 492 aa13.53□□□□□ -0.24
CLN3-251ENST00000636853 RIF1Q5UIP0 2472 aaKnown RBP13.53□□□□□ -0.24
CLN3-251ENST00000636853 MFSD2BA6NFX1 497 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 F5H5P2 479 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 HLA-AP01891 365 aaKnown RBP13.52□□□□□ -0.24
CLN3-251ENST00000636853 ZMYND11Q15326 602 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 ZDHHC22Q8N966 263 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 OR56B2PQ8NGI1 322 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 MARCH1Q8TCQ1 289 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 CPNE2Q96FN4 548 aaPredicted RBP13.52□□□□□ -0.24
CLN3-251ENST00000636853 SHARPINQ9H0F6 387 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 PLEKHJ1Q9NW61 149 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 RDH8Q9NYR8 311 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 CRIM1Q9NZV1 1036 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 GPR160Q9UJ42 338 aa13.52□□□□□ -0.24
CLN3-251ENST00000636853 FRYQ5TBA9 3013 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 NGFP01138 241 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 ATF4P18848 351 aaPredicted RBP13.52□□□□□ -0.25
CLN3-251ENST00000636853 CALCRP30988 508 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 ARR3P36575 388 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 FUT6P51993 359 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 SNU13P55769 128 aaKnown RBP13.52□□□□□ -0.25
CLN3-251ENST00000636853 PPP1R1AQ13522 171 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 FBXW9Q5XUX1 488 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 IGF2-ASQ6U949 168 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 IGFL2Q6UWQ7 119 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 P4HA3Q7Z4N8 544 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 SLC25A42Q86VD7 318 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 OR5H2Q8NGV7 314 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 HDHD3Q9BSH5 251 aaPredicted RBP13.52□□□□□ -0.25
CLN3-251ENST00000636853 KCNMB2Q9Y691 235 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 ZNF292O60281 2723 aa13.52□□□□□ -0.25
CLN3-251ENST00000636853 PRRC2CQ9Y520 2896 aaKnown RBP13.51□□□□□ -0.25
CLN3-251ENST00000636853 SERPINE3A8MV23 424 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 SDCBPO00560 298 aaPredicted RBP13.51□□□□□ -0.25
CLN3-251ENST00000636853 CFDP00746 253 aaPredicted RBP13.51□□□□□ -0.25
CLN3-251ENST00000636853 SERPINA5P05154 406 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 COX5BP10606 129 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 MPGP29372 298 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 CBX5P45973 191 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 ATP1B3P54709 279 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 OPCMLQ14982 345 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 VAX1Q5SQQ9 334 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 HOGA1Q86XE5 327 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms