RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 OR52I2Q8NH67 350 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 YIPF5Q969M3 257 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 TRIM63Q969Q1 353 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 PLPPR2Q96GM1 343 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 METTL9Q9H1A3 318 aa17.13■□□□□ 0.33
CLN3-250ENST00000636839 NPDC1Q9NQX5 325 aaPredicted RBP17.13■□□□□ 0.33
CLN3-250ENST00000636839 F5H5P2 479 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 SIAH2O43255 324 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 UBBP0CG47 229 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 TUBG1P23258 451 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 HOXA4Q00056 320 aaPredicted RBP17.12■□□□□ 0.33
CLN3-250ENST00000636839 PDCD1Q15116 288 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 OR8G1Q15617 311 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 C1QTNF12Q5T7M4 302 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 OLFML2AQ68BL7 652 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 POC5Q8NA72 575 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 PHF21AQ96BD5 680 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 OR51I2Q9H344 312 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 TUBG2Q9NRH3 451 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 CA10Q9NS85 328 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 MTCH1Q9NZJ7 389 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 KLK11Q9UBX7 282 aa17.12■□□□□ 0.33
CLN3-250ENST00000636839 MEIS3P1A6NDR6 274 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 PLA2G10O15496 165 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 CAPZA1P52907 286 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 RPS27AP62979 156 aaKnown RBP17.11■□□□□ 0.33
CLN3-250ENST00000636839 GNG3P63215 75 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 PITPNAQ00169 270 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 PLAC9Q5JTB6 97 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 CHST4Q8NCG5 386 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 OR51T1Q8NGJ9 327 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 GHRLQ9UBU3 117 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 RALYQ9UKM9 306 aaKnown RBP17.11■□□□□ 0.33
CLN3-250ENST00000636839 ATP23Q9Y6H3 246 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 METTL21EPA6NDL7 271 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 GRPP07492 148 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 GNB3P16520 340 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 BCL3P20749 454 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 TMEM50BP56557 158 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 RGS21Q2M5E4 152 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 PIGYQ3MUY2 71 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 DMRTC2Q8IXT2 367 aaPredicted RBP17.11■□□□□ 0.33
CLN3-250ENST00000636839 CPNE2Q96FN4 548 aaPredicted RBP17.11■□□□□ 0.33
CLN3-250ENST00000636839 CST11Q9H112 138 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 RBFOX1Q9NWB1 397 aaKnown RBP17.11■□□□□ 0.33
CLN3-250ENST00000636839 NDRG3Q9UGV2 375 aa17.11■□□□□ 0.33
CLN3-250ENST00000636839 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.1■□□□□ 0.33
CLN3-250ENST00000636839 TMEM235A6NFC5 223 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 TUBAL3A6NHL2 446 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 PLAUP00749 431 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 IGHV3-13P01766 116 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 MAB21L1Q13394 359 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 SPRNQ5BIV9 151 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 NCMAPQ5T1S8 102 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 TRIQKQ629K1 86 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 BAIAP2L2Q6UXY1 529 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 FBXL14Q8N1E6 418 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 PXT1Q8NFP0 134 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 SMIM4Q8WVI0 70 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 IL36RNQ9UBH0 155 aa17.1■□□□□ 0.33
CLN3-250ENST00000636839 ZSCAN5BA6NJL1 495 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 OR5B21A6NL26 309 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 SHISA9B4DS77 424 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 ORC5O43913 435 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 SPNP16150 400 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 SNU13P55769 128 aaKnown RBP17.09■□□□□ 0.33
CLN3-250ENST00000636839 KLF3P57682 345 aaPredicted RBP17.09■□□□□ 0.33
CLN3-250ENST00000636839 ZNF154Q13106 437 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 FAM76BQ5HYJ3 339 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 DCDC5Q6ZRR9 648 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 C1orf174Q8IYL3 243 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 SCCPDHQ8NBX0 429 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 NUP37Q8NFH4 326 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 OR10R2Q8NGX6 335 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 MICU1Q9BPX6 476 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 RTL8AQ9BWD3 113 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 KCNK7Q9Y2U2 307 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 ZNF462Q96JM2 2506 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 CTDSPLO15194 276 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 CSTBP04080 98 aaKnown RBP17.09■□□□□ 0.33
CLN3-250ENST00000636839 GABRR1P24046 479 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 MNDAP41218 407 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 SCN1BQ07699 218 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 DAZAP2Q15038 168 aaPredicted RBP17.09■□□□□ 0.33
CLN3-250ENST00000636839 MPPED2Q15777 294 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 TAF9Q16594 264 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 CDNFQ49AH0 187 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 FAM89BQ8N5H3 189 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 OR2Z1Q8NG97 314 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 TAAR3PQ9P1P4 343 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 POU2F3Q9UKI9 436 aa17.09■□□□□ 0.33
CLN3-250ENST00000636839 ANKHD1Q8IWZ3 2542 aaKnown RBP17.08■□□□□ 0.33
CLN3-250ENST00000636839 IGLV3-9A0A075B6K5 115 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 CDIPTO14735 213 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 GTF2F2P13984 249 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 GMFBP60983 142 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 ADIPOQQ15848 244 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 ZNF260Q3ZCT1 412 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 PRAMEF6Q5VXH4 476 aa17.08■□□□□ 0.33
CLN3-250ENST00000636839 ZNF57Q68EA5 555 aaPredicted RBP17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms