RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 MFNGO00587 321 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 ORC5O43913 435 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 ACAA1P09110 424 aaPredicted RBP9.06□□□□□ -0.96
CLN3-248ENST00000636355 CD3GP09693 182 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 FAM157BP0CG42 384 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 ZNF250P15622 560 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 GCH1P30793 250 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 GLRXP35754 106 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 RAG2P55895 527 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 RBM11P57052 281 aaKnown RBP9.06□□□□□ -0.96
CLN3-248ENST00000636355 IL24Q13007 206 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 PLA2G7Q13093 441 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 ZNF260Q3ZCT1 412 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 FAM76BQ5HYJ3 339 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 RGS7BPQ6MZT1 257 aaPredicted RBP9.06□□□□□ -0.96
CLN3-248ENST00000636355 PLET1Q6UQ28 207 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 CCBE1Q6UXH8 406 aaPredicted RBP9.06□□□□□ -0.96
CLN3-248ENST00000636355 GDPD3Q7L5L3 318 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 BIVMQ86UB2 503 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 LIX1LQ8IVB5 337 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 IZUMO1Q8IYV9 350 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 ACBD4Q8NC06 268 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 TMEM104Q8NE00 496 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 OR8G5Q8NG78 346 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 CMBLQ96DG6 245 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 RAB3CQ96E17 227 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 ADAT1Q9BUB4 502 aaKnown RBP9.06□□□□□ -0.96
CLN3-248ENST00000636355 NKIRAS2Q9NYR9 191 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 COQ3Q9NZJ6 369 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 PURGQ9UJV8 347 aaKnown RBP9.06□□□□□ -0.96
CLN3-248ENST00000636355 ANAPC10Q9UM13 185 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 PLEKHA6Q9Y2H5 1048 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 PCNX1Q96RV3 2341 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 PLCE1Q9P212 2302 aa9.06□□□□□ -0.96
CLN3-248ENST00000636355 ESPL1Q14674 2120 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 FASNP49327 2511 aaKnown RBP9.05□□□□□ -0.96
CLN3-248ENST00000636355 IGLV3-9A0A075B6K5 115 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 A0A1B0GUH1 482 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 FAM240BA0A1B0GVZ2 78 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 LANCL1O43813 399 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 AGFG2O95081 481 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 SERPINA2P20848 420 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 CALCRP30988 508 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 TAS2R19P59542 299 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 SNTB2Q13425 540 aaKnown RBP9.05□□□□□ -0.96
CLN3-248ENST00000636355 MPV17LQ2QL34 196 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 ACTBL2Q562R1 376 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 OR2T2Q6IF00 324 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 OR10K2Q6IF99 312 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 Q6ZTK2 550 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 OSR2Q8N2R0 312 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 OR51T1Q8NGJ9 327 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 OR5D18Q8NGL1 313 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 OR8S1Q8NH09 359 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 DPAGT1Q9H3H5 408 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 ZNF442Q9H7R0 627 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 NPAP1Q9NZP6 1156 aa9.05□□□□□ -0.96
CLN3-248ENST00000636355 A0A1B0GVG6 124 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 TMEM235A6NFC5 223 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 POM121CA8CG34 1229 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 ZNF732B4DXR9 585 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 M0R1B8 84 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 TIMM8AO60220 97 aaPredicted RBP9.04□□□□□ -0.96
CLN3-248ENST00000636355 IGHV3-13P01766 116 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 AKAIN1P0CW23 69 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 AGAP20933 346 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 CD40P25942 277 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 BTCP35070 178 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 HAAOP46952 286 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 VEGFCP49767 419 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 ZNF83P51522 516 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 BCAP31P51572 246 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 GPM6AP51674 278 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 GNG2P59768 71 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 FGF12P61328 243 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 BTG1P62324 171 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 FAM27E3Q08E93 113 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 PSG7Q13046 419 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 MADCAM1Q13477 382 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 IL13RA2Q14627 380 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 MEF2DQ14814 521 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 PCGF3Q3KNV8 242 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 MOGAT2Q3SYC2 334 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 PLA1AQ53H76 456 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 SPATA46Q5T0L3 261 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 PCSK4Q6UW60 755 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 SLC25A26Q70HW3 274 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 C1QL2Q7Z5L3 287 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 CELF2-AS1Q8N7Q2 184 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 TMEM229BQ8NBD8 167 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 GALNT11Q8NCW6 608 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 BHLHE23Q8NDY6 225 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 OR13G1Q8NGZ3 307 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 OR51F2Q8NH61 342 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 CHAC2Q8WUX2 184 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 ST8SIA4Q92187 359 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 RNASE6Q93091 150 aaKnown RBP9.04□□□□□ -0.96
CLN3-248ENST00000636355 SEH1LQ96EE3 360 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 RNF170Q96K19 258 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 NKX3-1Q99801 234 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms