RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-223	ENST00000629179	DGUOK	Q16854	277 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	LRRC10	Q5BKY1	277 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	TMEM244	Q5VVB8	128 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	BRD3OS	Q6XYD6	125 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	ACP7	Q6ZNF0	438 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	ZNF573	Q86YE8	665 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	CALHM1	Q8IU99	346 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	BATF2	Q8N1L9	274 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	OR52I1	Q8NGK6	324 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	CYGB	Q8WWM9	190 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	MED30	Q96HR3	178 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	ZNF48	Q96MX3	618 aa	Predicted RBP	11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	WDFY2	Q96P53	400 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	JMJD8	Q96S16	334 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	TBX15	Q96SF7	602 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	ZNF649	Q9BS31	505 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	ALG8	Q9BVK2	526 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	SIRPD	Q9H106	197 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	DNTTIP1	Q9H147	329 aa		11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	ISG20L2	Q9H9L3	353 aa	Known RBP	11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	RPL36	Q9Y3U8	105 aa	Known RBP	11.74	□□□□□ -0.53
PNKP-223	ENST00000629179	IGKV1-27	A0A075B6S5	117 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	TRIM77	I1YAP6	450 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	SIGLEC5	O15389	551 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	IGHA1	P01876	353 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	PGA5	P0DJD9	388 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	ACTA2	P62736	377 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	ACTG2	P63267	376 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	IL13RA1	P78552	427 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	RAB40B	Q12829	278 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	C11orf91	Q3C1V1	193 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	KIAA2026	Q5HYC2	2103 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	METTL11B	Q5VVY1	283 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	RBMS3	Q6XE24	437 aa	Known RBP	11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	POC1A	Q8NBT0	407 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	ZNRF1	Q8ND25	227 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	LY6G5B	Q8NDX9	201 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	CCDC54	Q8NEL0	328 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	OR10AC1	Q8NH08	325 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	CNIH3	Q8TBE1	160 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	ZFAND2B	Q8WV99	257 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	H1FX	Q92522	213 aa	Known RBP	11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	ADAT3	Q96EY9	351 aa	Predicted RBP	11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	DUX5	Q96PT3	197 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	DCTN5	Q9BTE1	182 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	CHST5	Q9GZS9	411 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	CNTD2	Q9H8S5	307 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	MRPS18A	Q9NVS2	196 aa	Known RBP	11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	ERVK13-1	Q9NX77	482 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	RASL12	Q9NYN1	266 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	SLC25A10	Q9UBX3	287 aa	Predicted RBP	11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	ZNF222	Q9UK12	451 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	SLC7A11	Q9UPY5	501 aa		11.73	□□□□□ -0.53
PNKP-223	ENST00000629179	RFPL4A	A6NLU0	287 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	OR4C45	A6NMZ5	311 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	RFPL4AL1	F8VTS6	287 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	NOS1AP	O75052	506 aa	Predicted RBP	11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	GATB	O75879	557 aa	Known RBP	11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	INMT	O95050	263 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	SERPINA3	P01011	423 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	NDUFB7	P17568	137 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	MPZ	P25189	248 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	CCR9	P51686	369 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	ALKBH1	Q13686	389 aa	Known RBP	11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	KLHL22	Q53GT1	634 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	GPR157	Q5UAW9	335 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	ZNF691	Q5VV52	312 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	RUSC1-AS1	Q66K80	236 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	C9orf139	Q6ZV77	190 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	SYS1	Q8N2H4	156 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	DHRSX	Q8N5I4	330 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	CD177	Q8N6Q3	437 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	PACRGL	Q8N7B6	248 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	FGGY	Q96C11	551 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	MRPL48	Q96GC5	212 aa	Known RBP	11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	ELL3	Q9HB65	397 aa	Predicted RBP	11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	ONECUT1	Q9UBC0	465 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	POLDIP2	Q9Y2S7	368 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	MAB21L2	Q9Y586	359 aa		11.72	□□□□□ -0.53
PNKP-223	ENST00000629179	CENPVL3	A0A0U1RRI6	287 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	MDFIC2	A0A1B0GVS7	189 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179		E9PI62	339 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	GPR37	O15354	613 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	NXPH2	O95156	264 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	ISG15	P05161	165 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	CEBPD	P49716	269 aa	Predicted RBP	11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	FUT6	P51993	359 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	UBA52	P62987	128 aa	Known RBP	11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	ADARB1	P78563	741 aa	Known RBP	11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	IL24	Q13007	206 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	SMIM21	Q3B7S5	101 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	TTC23	Q5W5X9	447 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	ZNF676	Q8N7Q3	588 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	TMEM185A	Q8NFB2	350 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	OR51A4	Q8NGJ6	313 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	FAM216A	Q8WUB2	273 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	LHX4	Q969G2	390 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	C10orf35	Q96D05	121 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	SDSL	Q96GA7	329 aa		11.71	□□□□□ -0.53
PNKP-223	ENST00000629179	C1orf147	Q96MC9	270 aa	Predicted RBP	11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms