RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 C3orf80F5H4A9 247 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 EFSO43281 561 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 IFNA7P01567 189 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 EDN3P14138 238 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 PPIAP62937 165 aaKnown RBP9.23□□□□□ -0.93
CUX1-221ENST00000622516 FAM3AP98173 230 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 PMP22Q01453 160 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 HLXQ14774 488 aaPredicted RBP9.23□□□□□ -0.93
CUX1-221ENST00000622516 PIGYQ3MUY2 71 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 SLC25A42Q86VD7 318 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 DEFB124Q8NES8 71 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 ABI3Q9P2A4 366 aa9.23□□□□□ -0.93
CUX1-221ENST00000622516 RPS10-NUDT3A0A1W2PQS6 291 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 OR5H14A6NHG9 310 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 WISP2O76076 250 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 SPDEFO95238 335 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 NRASP01111 189 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 APOC1P02654 83 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 CSTBP04080 98 aaKnown RBP9.22□□□□□ -0.93
CUX1-221ENST00000622516 GSTP1P09211 210 aaKnown RBP9.22□□□□□ -0.93
CUX1-221ENST00000622516 CD79AP11912 226 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 S100A11P31949 105 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 OPRM1P35372 400 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 OR3A2P47893 321 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 GSK3AP49840 483 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 AIMP2Q13155 320 aaKnown RBP9.22□□□□□ -0.93
CUX1-221ENST00000622516 RSU1Q15404 277 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 RNFT1Q5M7Z0 435 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 C3P1Q6ZMU1 363 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 LYG2Q86SG7 212 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 OR5H2Q8NGV7 314 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 TERB2Q8NHR7 220 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 COQ8AQ8NI60 647 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 LRRC20Q8TCA0 184 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 CCDC120Q96HB5 630 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 TMPRSS13Q9BYE2 586 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 MFFQ9GZY8 342 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 C5orf66Q9H5L9 145 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 B3GNT2Q9NY97 397 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 EHFQ9NZC4 300 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 CRIM1Q9NZV1 1036 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 IGKV1-12A0A0C4DH73 117 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 C5orf49A4QMS7 147 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 SCGNO76038 276 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 FARS2O95363 451 aaKnown RBP9.22□□□□□ -0.93
CUX1-221ENST00000622516 IGKV1D-12P01611 117 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 SERPINA5P05154 406 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 SP1P08047 785 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 MMP7P09237 267 aaPredicted RBP9.22□□□□□ -0.93
CUX1-221ENST00000622516 GLRA1P23415 457 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 ATP1B3P54709 279 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 ESCO2Q56NI9 601 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 MOB3CQ70IA8 216 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 NUFIP2Q7Z417 695 aaKnown RBP9.22□□□□□ -0.93
CUX1-221ENST00000622516 ZNF546Q86UE3 836 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 MED12LQ86YW9 2145 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 FAM89BQ8N5H3 189 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 BHLHE23Q8NDY6 225 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 PPP1R1CQ8WVI7 109 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 BORCS8Q96FH0 119 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 LDAHQ9H6V9 325 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 SLC2A8Q9NY64 477 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 RDH8Q9NYR8 311 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 MAB21L2Q9Y586 359 aa9.22□□□□□ -0.93
CUX1-221ENST00000622516 DHRS7CA6NNS2 312 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 MPTX1A8MV57 137 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 GEMIN2O14893 280 aaKnown RBP9.21□□□□□ -0.93
CUX1-221ENST00000622516 NKX2-8O15522 239 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 NDUFA2O43678 99 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 KNG1P01042 644 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 SFTPBP07988 381 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 UBBP0CG47 229 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 ZNF708P17019 499 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 IGFBP7Q16270 282 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 Q3ZCU0 254 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 PDSS1Q5T2R2 415 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 JMJD6Q6NYC1 403 aaPredicted RBP9.21□□□□□ -0.93
CUX1-221ENST00000622516 OR5M8Q8NGP6 311 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 OR13G1Q8NGZ3 307 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 CDC6Q99741 560 aa9.21□□□□□ -0.93
CUX1-221ENST00000622516 ZNF107Q9UII5 783 aaPredicted RBP9.21□□□□□ -0.93
CUX1-221ENST00000622516 ZNF850A8MQ14 1090 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 SYNGR4O95473 234 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 NGFP01138 241 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 ARG2P78540 354 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 RIPPLY2Q5TAB7 128 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 PLCXD3Q63HM9 321 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 HOGA1Q86XE5 327 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 CALHM1Q8IU99 346 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 MRPS18CQ9Y3D5 142 aaKnown RBP9.21□□□□□ -0.94
CUX1-221ENST00000622516 PIEZO2Q9H5I5 2752 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 C5orf51A6NDU8 294 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 FOXI3A8MTJ6 420 aaPredicted RBP9.21□□□□□ -0.94
CUX1-221ENST00000622516 MSTNO14793 375 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 ADAP1O75689 374 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 SCO1O75880 301 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 CPT2P23786 658 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 RBP2P50120 134 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 GMFBP60983 142 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 DHODHQ02127 395 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms