RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 hCG_1807616A0A1W2PRN6 198 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 J3QL48 77 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 SYNGR1O43759 233 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 RHBDL1O75783 438 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 ARL6IP5O75915 188 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 LHBP01229 141 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 OCMP0CE72 109 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-211ENST00000618700 MTCP1P56278 107 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 IL24Q13007 206 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 C1orf87Q8N0U7 546 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 OR52N4Q8NGI2 321 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 OR13F1Q8NGS4 319 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 BPESC1Q9GZL8 116 aa16.57■□□□□ 0.24
UPF3A-211ENST00000618700 METTL17Q9H7H0 456 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-211ENST00000618700 SRRM5B3KS81 715 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 FSTL3O95633 263 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 IRF2P14316 349 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 ADRA2CP18825 462 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 GADD45AP24522 165 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 FGF9P31371 208 aaPredicted RBP16.56■□□□□ 0.24
UPF3A-211ENST00000618700 NR4A2P43354 598 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 GPR6P46095 362 aaPredicted RBP16.56■□□□□ 0.24
UPF3A-211ENST00000618700 ZP1P60852 638 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 HOXA4Q00056 320 aaPredicted RBP16.56■□□□□ 0.24
UPF3A-211ENST00000618700 KISS1Q15726 138 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 DDI2Q5TDH0 399 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 LRRTM1Q86UE6 522 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 LYPD6Q86Y78 171 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 LURAP1LQ8IV03 231 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 LRRC29Q8WV35 223 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 RFT1Q96AA3 541 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 Q96MF0 132 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 OR51E2Q9H255 320 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 TCF7L1Q9HCS4 588 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 POLDIP2Q9Y2S7 368 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 WIPI2Q9Y4P8 454 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 NPTNQ9Y639 398 aa16.56■□□□□ 0.24
UPF3A-211ENST00000618700 A0A096LNT2 108 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.55■□□□□ 0.24
UPF3A-211ENST00000618700 MAGEB3O15480 346 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 PPIHO43447 177 aaKnown RBP16.55■□□□□ 0.24
UPF3A-211ENST00000618700 IGHV2-70P01814 119 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 ACAA1P09110 424 aaPredicted RBP16.55■□□□□ 0.24
UPF3A-211ENST00000618700 PGA5P0DJD9 388 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 SLC25A16P16260 332 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 EGR1P18146 543 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 SRMP19623 302 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 CALRP27797 417 aaKnown RBP16.55■□□□□ 0.24
UPF3A-211ENST00000618700 FAM201AQ5SY85 155 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 C22orf42Q6IC83 251 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 NKAIN3Q8N8D7 197 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 POC1AQ8NBT0 407 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 TMIGD2Q96BF3 282 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 CPNE2Q96FN4 548 aaPredicted RBP16.55■□□□□ 0.24
UPF3A-211ENST00000618700 TIMD4Q96H15 378 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 TXNL4BQ9NX01 149 aaKnown RBP16.55■□□□□ 0.24
UPF3A-211ENST00000618700 SSR3Q9UNL2 185 aa16.55■□□□□ 0.24
UPF3A-211ENST00000618700 MEGF11A6BM72 1044 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 NOS1APO75052 506 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-211ENST00000618700 PLATP00750 562 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 MAS1P04201 325 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 CD80P33681 288 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 POU3F4P49335 361 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 BTG1P62324 171 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 PDZK1IP1Q13113 114 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 ZMYND11Q15326 602 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 C4orf48Q5BLP8 95 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 SLC25A26Q70HW3 274 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 CDH26Q8IXH8 852 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 OR5D18Q8NGL1 313 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 ZNF671Q8TAW3 534 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 RAB1CQ92928 201 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 NRIP2Q9BQI9 281 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 EXOSC4Q9NPD3 245 aaKnown RBP16.54■□□□□ 0.24
UPF3A-211ENST00000618700 SNTG1Q9NSN8 517 aa16.54■□□□□ 0.24
UPF3A-211ENST00000618700 SHISA3A0PJX4 238 aa16.53■□□□□ 0.24
UPF3A-211ENST00000618700 AKR7A2O43488 359 aa16.53■□□□□ 0.24
UPF3A-211ENST00000618700 ZNF93P35789 620 aaPredicted RBP16.53■□□□□ 0.24
UPF3A-211ENST00000618700 ERVK11-1P61568 191 aa16.53■□□□□ 0.24
UPF3A-211ENST00000618700 TIMM50Q3ZCQ8 353 aa16.53■□□□□ 0.24
UPF3A-211ENST00000618700 AVPI1Q5T686 147 aa16.53■□□□□ 0.24
UPF3A-211ENST00000618700 TEX36Q5VZQ5 186 aa16.53■□□□□ 0.24
UPF3A-211ENST00000618700 PEG10Q86TG7 708 aaKnown RBP16.53■□□□□ 0.24
UPF3A-211ENST00000618700 NKX3-1Q99801 234 aaPredicted RBP16.53■□□□□ 0.24
UPF3A-211ENST00000618700 CHCHD6Q9BRQ6 235 aa16.53■□□□□ 0.24
UPF3A-211ENST00000618700 SLITRK2Q9H156 845 aa16.53■□□□□ 0.24
UPF3A-211ENST00000618700 MTCH1Q9NZJ7 389 aa16.53■□□□□ 0.24
UPF3A-211ENST00000618700 PPIAL4EA0A075B759 164 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 TRAV1-2A0A0B4J238 106 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 IGKV1-12A0A0C4DH73 117 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 PPIAL4DF5H284 164 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 LGALS8O00214 317 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 WNT9BO14905 357 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 ZNF205O95201 554 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 IGKV1D-12P01611 117 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 PPIAL4FP0DN26 164 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 CD37P11049 281 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 OR3A4PP47883 348 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 GDPGP1Q6ZNW5 385 aa16.52■□□□□ 0.24
UPF3A-211ENST00000618700 SATL1Q86VE3 508 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms