RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 GPR84Q9NQS5 396 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 USE1Q9NZ43 259 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 ENOPH1Q9UHY7 261 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 POMPQ9Y244 141 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 PIGLQ9Y2B2 252 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 KLHDC2Q9Y2U9 406 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 PRKDCP78527 4128 aaKnown RBP11.1□□□□□ -0.63
TRIM28-211ENST00000597968 TCRBV3S1A0A5B6 114 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 VGLL3A8MV65 326 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 H3BUX3 64 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 MPZP25189 248 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 EFNB2P52799 333 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 CRISP1P54107 249 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 ERVFRD-1P60508 538 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 GMFBP60983 142 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 RPL31P62899 125 aaKnown RBP11.09□□□□□ -0.63
TRIM28-211ENST00000597968 EGR3Q06889 387 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 KLRD1Q13241 179 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 CEP78Q5JTW2 689 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 PLCXD3Q63HM9 321 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 HCP5Q6MZN7 132 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 CRIP3Q6Q6R5 217 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 MOB3CQ70IA8 216 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 COMMD2Q86X83 199 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 OR2T6Q8NHC8 308 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 OR51E1Q8TCB6 317 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 CNN2Q99439 309 aaKnown RBP11.09□□□□□ -0.63
TRIM28-211ENST00000597968 CADM1Q9BY67 442 aaKnown RBP11.09□□□□□ -0.63
TRIM28-211ENST00000597968 NPFFR1Q9GZQ6 430 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 PPA2Q9H2U2 334 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 HES4Q9HCC6 221 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 PAPOLBQ9NRJ5 636 aaKnown RBP11.09□□□□□ -0.63
TRIM28-211ENST00000597968 TVP23BQ9NYZ1 205 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 V9GYS6 101 aa11.09□□□□□ -0.63
TRIM28-211ENST00000597968 RFPL4AA6NLU0 287 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 RFPL4AL1F8VTS6 287 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 ANGPTL7O43827 346 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 DNAJC8O75937 253 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-211ENST00000597968 PRDX2P32119 198 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 HAAOP46952 286 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 CAPZA1P52907 286 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 LGALS4P56470 323 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 NXNL2Q5VZ03 156 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 FAHD1Q6P587 224 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 ELMOD2Q8IZ81 293 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 FAM185AQ8N0U4 392 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 CFHR4Q92496 578 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 FOXRED1Q96CU9 486 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-211ENST00000597968 NRIP2Q9BQI9 281 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 PKIBQ9C010 78 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 SEBOXQ9HB31 216 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-211ENST00000597968 H2AFY2Q9P0M6 372 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-211ENST00000597968 TBL2Q9Y4P3 447 aaKnown RBP11.08□□□□□ -0.64
TRIM28-211ENST00000597968 SNX5Q9Y5X3 404 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 R4GMQ9 66 aa11.08□□□□□ -0.64
TRIM28-211ENST00000597968 TGP01266 2768 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 PQLC2LA1A4F0 135 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 CCDC182A6NF36 153 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 FAM90A8PA6NJQ4 464 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 LOC110117498-PIK3R3F6TDL0 507 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 PSMD9O00233 223 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 SRSF10O75494 262 aaKnown RBP11.07□□□□□ -0.64
TRIM28-211ENST00000597968 TSPAN15O95858 294 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 TTRP02766 147 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 OPN1MWP04001 364 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 TK1P04183 234 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 OPN1MW2P0DN77 364 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 OPN1MW3P0DN78 364 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 FAHP16930 419 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 DAPP51397 102 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 IL24Q13007 206 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 PTGES3Q15185 160 aaKnown RBP11.07□□□□□ -0.64
TRIM28-211ENST00000597968 TMEM200BQ69YZ2 307 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 ZNF322Q6U7Q0 402 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-211ENST00000597968 MEPCEQ7L2J0 689 aaKnown RBP11.07□□□□□ -0.64
TRIM28-211ENST00000597968 C11orf42Q8N5U0 333 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 C10orf35Q96D05 121 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 MALSU1Q96EH3 234 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 AJUBAQ96IF1 538 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 C19orf12Q9NSK7 152 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 CLN6Q9NWW5 311 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 PITPNC1Q9UKF7 332 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 IKZF2Q9UKS7 526 aa11.07□□□□□ -0.64
TRIM28-211ENST00000597968 A0A1W2PRD5 423 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 A0A1W2PRF3 423 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 A0A1W2PRM7 423 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 C17orf98A8MV24 154 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 H3BUI4 141 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 MITFO75030 526 aaPredicted RBP11.06□□□□□ -0.64
TRIM28-211ENST00000597968 NXPH2O95156 264 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 MRPL3P09001 348 aaKnown RBP11.06□□□□□ -0.64
TRIM28-211ENST00000597968 CCL1P22362 96 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 CXCR4P61073 352 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 ERVK11-1P61568 191 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 EFNB1P98172 346 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 BCL2L15Q5TBC7 163 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 REC114Q7Z4M0 266 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 BCDIN3DQ7Z5W3 292 aaKnown RBP11.06□□□□□ -0.64
TRIM28-211ENST00000597968 GID4Q8IVV7 300 aa11.06□□□□□ -0.64
TRIM28-211ENST00000597968 MKXQ8IYA7 352 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms