RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 ODF4Q2M2E3 257 aa12.38□□□□□ -0.43
LIG1-215ENST00000597901 METAP1DQ6UB28 335 aaPredicted RBP12.38□□□□□ -0.43
LIG1-215ENST00000597901 FIP1L1Q6UN15 594 aaKnown RBP12.38□□□□□ -0.43
LIG1-215ENST00000597901 ACP7Q6ZNF0 438 aa12.38□□□□□ -0.43
LIG1-215ENST00000597901 CCDC121Q6ZUS5 278 aa12.38□□□□□ -0.43
LIG1-215ENST00000597901 POC1AQ8NBT0 407 aa12.38□□□□□ -0.43
LIG1-215ENST00000597901 CHIAQ9BZP6 476 aa12.38□□□□□ -0.43
LIG1-215ENST00000597901 SIRT7Q9NRC8 400 aa12.38□□□□□ -0.43
LIG1-215ENST00000597901 POMT1Q9Y6A1 747 aa12.38□□□□□ -0.43
LIG1-215ENST00000597901 RFPL4AA6NLU0 287 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 RFPL4AL1F8VTS6 287 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 RNASEK-C17orf49H0YIS7 233 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 SYT7O43581 403 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 CRYBA1P05813 215 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 PGA5P0DJD9 388 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 MDKP21741 143 aaPredicted RBP12.37□□□□□ -0.43
LIG1-215ENST00000597901 DLX1P56177 255 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 ZNF85Q03923 595 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 ZIK1Q3SY52 487 aaPredicted RBP12.37□□□□□ -0.43
LIG1-215ENST00000597901 SLC25A30Q5SVS4 291 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 ANGPTL5Q86XS5 388 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 CD177Q8N6Q3 437 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 NPRL2Q8WTW4 380 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 SSMEM1Q8WWF3 244 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 TNFRSF14Q92956 283 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 HRASLS5Q96KN8 279 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 ADI1Q9BV57 179 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 ELL3Q9HB65 397 aaPredicted RBP12.37□□□□□ -0.43
LIG1-215ENST00000597901 USE1Q9NZ43 259 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.37□□□□□ -0.432e-6■□□□□ 8.3
LIG1-215ENST00000597901 FAM96BQ9Y3D0 163 aa12.37□□□□□ -0.43
LIG1-215ENST00000597901 E9PQ18 207 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 H3BSH0 61 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 J3QT63 122 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 M0R1W7 72 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 EI24O14681 340 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 ENTPD6O75354 484 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 IGHV4-59P01825 116 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 EEF1B2P24534 225 aaKnown RBP12.36□□□□□ -0.43
LIG1-215ENST00000597901 IER3P46695 156 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 GUCA2AQ02747 115 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 UBE2V2Q15819 145 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 ZFP1Q6P2D0 407 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 C10orf67Q8IYJ2 551 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 PRSS35Q8N3Z0 413 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 TMEM185AQ8NFB2 350 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 RNF166Q96A37 237 aaPredicted RBP12.36□□□□□ -0.43
LIG1-215ENST00000597901 NRIP2Q9BQI9 281 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 IMPAD1Q9NX62 359 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 SLC7A11Q9UPY5 501 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 POLDIP2Q9Y2S7 368 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 ORC6Q9Y5N6 252 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 MMP24Q9Y5R2 645 aa12.36□□□□□ -0.43
LIG1-215ENST00000597901 TRBV23-1A0A0A0MS06 115 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 FAM230AA0A1W2PPH8 454 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 A0A1W2PQ09 198 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 A0A1W2PRD5 423 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 A0A1W2PRF3 423 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 A0A1W2PRM7 423 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 ANKRD61A6NGH8 418 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 J3QRE1 110 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 MPZP25189 248 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 ALDH3A2P51648 485 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 CAPZA1P52907 286 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 ISL1P61371 349 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 ERVK11-1P61568 191 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 SNRPGP62308 76 aaKnown RBP12.35□□□□□ -0.43
LIG1-215ENST00000597901 BLMHQ13867 455 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 OCLNQ16625 522 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 SMIM21Q3B7S5 101 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 TP53I3Q53FA7 332 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 MEDAGQ5VYS4 303 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 KCTD20Q7Z5Y7 419 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 LDLRAD3Q86YD5 345 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 CALHM1Q8IU99 346 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 RDH10Q8IZV5 341 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 CBR4Q8N4T8 237 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 CCDC54Q8NEL0 328 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 SLITRK2Q9H156 845 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 METTL8Q9H825 291 aaKnown RBP12.35□□□□□ -0.43
LIG1-215ENST00000597901 C1RLQ9NZP8 487 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 GNG8Q9UK08 70 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 CAB39Q9Y376 341 aaPredicted RBP12.35□□□□□ -0.43
LIG1-215ENST00000597901 NBEAL1Q6ZS30 2694 aa12.35□□□□□ -0.43
LIG1-215ENST00000597901 A0A1B0GUS0 222 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 H0YAE9 185 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 NPFFO15130 113 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 NXPH2O95156 264 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 SERPINA3P01011 423 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 KIR3DL2P43630 455 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 CEBPDP49716 269 aaPredicted RBP12.34□□□□□ -0.43
LIG1-215ENST00000597901 UBE2E1P51965 193 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 FUT6P51993 359 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 RELBQ01201 579 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 KLRD1Q13241 179 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 TMEM200BQ69YZ2 307 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 FAM185AQ8N0U4 392 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 BATF2Q8N1L9 274 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 PNKDQ8N490 385 aa12.34□□□□□ -0.43
LIG1-215ENST00000597901 ZNF561Q8N587 486 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms