RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LHX6Q9UPM6 363 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 NOP16Q9Y3C1 178 aaKnown RBP12.23□□□□□ -0.45
LIG3-205ENST00000585941 NPTNQ9Y639 398 aa12.23□□□□□ -0.45
LIG3-205ENST00000585941 TPD52L2O43399 206 aaKnown RBP12.22□□□□□ -0.45
LIG3-205ENST00000585941 ANGPTL7O43827 346 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 LYZL6O75951 148 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 PDGFAP04085 211 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 TPOP07202 933 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 CBR1P16152 277 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 TUBG1P23258 451 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 HRH1P35367 487 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 HLXQ14774 488 aaPredicted RBP12.22□□□□□ -0.45
LIG3-205ENST00000585941 PLEKHN1Q494U1 663 aaPredicted RBP12.22□□□□□ -0.45
LIG3-205ENST00000585941 SCGB2B2Q4G0G5 96 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 OR52W1Q6IF63 320 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM180AQ6UWF9 173 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 SEZ6L2Q6UXD5 910 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 TMEM200AQ86VY9 491 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 HOGA1Q86XE5 327 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 SPACA3Q8IXA5 215 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 Q8NFD4 153 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 SEC22CQ9BRL7 303 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 ZNF436Q9C0F3 470 aaPredicted RBP12.22□□□□□ -0.45
LIG3-205ENST00000585941 TUBG2Q9NRH3 451 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 GPR160Q9UJ42 338 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 MSRB2Q9Y3D2 182 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 AKAP13Q12802 2813 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM172BPA6NC97 362 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A10PA6NDY2 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A18PA6NE21 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A16PA6NEW6 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A20PA6NIJ5 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A8PA6NJQ4 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A7PA6NKC0 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 OR5B21A6NL26 309 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A22PA8MWA6 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A12PA8MX19 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A5PA8MXJ8 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A23PA8MXZ1 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 H3BUI4 141 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FABP7O15540 132 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A15PP0C7V4 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A13PP0C7W8 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A14PP0C7W9 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FAM90A24PP0C7X0 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 VSIG10L2P0DP72 767 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 CXCL3P19876 107 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 GABRR1P24046 479 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 PMELP40967 661 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 VWA1Q6PCB0 445 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FBXW12Q6X9E4 464 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 BEND4Q6ZU67 534 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 CD163Q86VB7 1156 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 TMEM17Q86X19 198 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 MKXQ8IYA7 352 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 ZNF611Q8N823 705 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 SNAPC3Q92966 411 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 FBXW5Q969U6 566 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 EDARQ9UNE0 448 aa12.22□□□□□ -0.45
LIG3-205ENST00000585941 PRRC2CQ9Y520 2896 aaKnown RBP12.21□□□□□ -0.45
LIG3-205ENST00000585941 TNFSF13O75888 250 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 PLATP00750 562 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 AMY2BP19961 511 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 CDK10Q15131 360 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 NKPD1Q17RQ9 610 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 C4orf46Q504U0 113 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 C1orf185Q5T7R7 199 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 ELP2Q6IA86 826 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 FAHD2BQ6P2I3 314 aaPredicted RBP12.21□□□□□ -0.45
LIG3-205ENST00000585941 RFPL4BQ6ZWI9 263 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 OR13C8Q8NGS7 320 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 OR5H2Q8NGV7 314 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 ZFAND1Q8TCF1 268 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 ZNF431Q8TF32 576 aaPredicted RBP12.21□□□□□ -0.45
LIG3-205ENST00000585941 CAPSLQ8WWF8 208 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 ASB13Q8WXK3 278 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 FAHD2AQ96GK7 314 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 SCGB3A2Q96PL1 93 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 CHST6Q9GZX3 395 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 POFUT1Q9H488 388 aa12.21□□□□□ -0.45
LIG3-205ENST00000585941 INTS1Q8N201 2190 aaKnown RBP12.21□□□□□ -0.46
LIG3-205ENST00000585941 IGKV1-12A0A0C4DH73 117 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 RRP8O43159 456 aaKnown RBP12.2□□□□□ -0.46
LIG3-205ENST00000585941 SNAPC5O75971 98 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 CGAP01215 116 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 IL2RAP01589 272 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 IGKV1D-12P01611 117 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 SELEP16581 610 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 SPINK2P20155 84 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 CHATP28329 748 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 TIMP3P35625 211 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 OR3A3P47888 321 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 IDH3GP51553 393 aaPredicted RBP12.2□□□□□ -0.46
LIG3-205ENST00000585941 RBM11P57052 281 aaKnown RBP12.2□□□□□ -0.46
LIG3-205ENST00000585941 GNG3P63215 75 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 MICBQ29980 383 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 C1QTNF12Q5T7M4 302 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 ATPAF1Q5TC12 328 aaPredicted RBP12.2□□□□□ -0.46
LIG3-205ENST00000585941 SLC25A26Q70HW3 274 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 ZNF573Q86YE8 665 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms