RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MOB3CQ70IA8 216 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 TMEM179BQ7Z7N9 219 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 POC1AQ8NBT0 407 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 BBS1Q8NFJ9 593 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 NPFFR1Q9GZQ6 430 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 HEXA-AS1Q9H8Q6 139 aa17.1■□□□□ 0.33
VPS53-216ENST00000574029 TMEM269A0A1B0GVZ9 245 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 A0A1W2PPH5 198 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 RFPL4AA6NLU0 287 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 RFPL4AL1F8VTS6 287 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 CAPZA1P52907 286 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 HCCSP53701 268 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 RPL31P62899 125 aaKnown RBP17.09■□□□□ 0.33
VPS53-216ENST00000574029 RIPPLY1Q0D2K3 151 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 ZBTB37Q5TC79 503 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 ZNF561Q8N587 486 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 DTX3Q8N9I9 347 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 NRBF2Q96F24 287 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 YIPF3Q9GZM5 350 aa17.09■□□□□ 0.33
VPS53-216ENST00000574029 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.09■□□□□ 0.33
VPS53-216ENST00000574029 CIB2O75838 187 aa17.08■□□□□ 0.32
VPS53-216ENST00000574029 OSMP13725 252 aa17.08■□□□□ 0.32
VPS53-216ENST00000574029 RPS7P62081 194 aaKnown RBP17.08■□□□□ 0.32
VPS53-216ENST00000574029 SMIM21Q3B7S5 101 aa17.08■□□□□ 0.32
VPS53-216ENST00000574029 KCTD18Q6PI47 426 aaPredicted RBP17.08■□□□□ 0.32
VPS53-216ENST00000574029 PBOV1Q9GZY1 135 aa17.08■□□□□ 0.32
VPS53-216ENST00000574029 GPR84Q9NQS5 396 aa17.08■□□□□ 0.32
VPS53-216ENST00000574029 PSMD9O00233 223 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 SLC1A7O00341 560 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 NOS1APO75052 506 aaPredicted RBP17.07■□□□□ 0.32
VPS53-216ENST00000574029 VSIG10L2P0DP72 767 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 FAHP16930 419 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 PRDX2P32119 198 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 BMXP51813 675 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 PLCXD3Q63HM9 321 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 OR51E1Q8TCB6 317 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 ZNF488Q96MN9 340 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 TEAD3Q99594 435 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 MROQ9BYG7 248 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 USE1Q9NZ43 259 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 ENPP5Q9UJA9 477 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 PIGLQ9Y2B2 252 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 AP4S1Q9Y587 144 aa17.07■□□□□ 0.32
VPS53-216ENST00000574029 hCG_1809904A0A1W2PP81 198 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 A0A1W2PPE2 198 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 A0A1W2PR64 198 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 A0A1W2PRV1 198 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 FAM90A8PA6NJQ4 464 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 VGLL3A8MV65 326 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 PRR32B1ATL7 298 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 SYNGR1O43759 233 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 ZNF254O75437 659 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 E2F6O75461 281 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 PGA5P0DJD9 388 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 CCL3L1P16619 93 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 COX7A1P24310 79 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 ERVFRD-1P60508 538 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 ROM1Q03395 351 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 APOFQ13790 326 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 FAM189A2Q15884 450 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 Q6ZPA2 131 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 REC114Q7Z4M0 266 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 COMMD2Q86X83 199 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 OR2T27Q8NH04 317 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 PPP1R14AQ96A00 147 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 ZNF702PQ9H963 129 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 NUFIP1Q9UHK0 495 aaKnown RBP17.06■□□□□ 0.32
VPS53-216ENST00000574029 ZNF281Q9Y2X9 895 aa17.06■□□□□ 0.32
VPS53-216ENST00000574029 DHRS3O75911 302 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 NRASP01111 189 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 PRB2P02812 416 aaPredicted RBP17.05■□□□□ 0.32
VPS53-216ENST00000574029 ANXA8P13928 327 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 CEBPDP49716 269 aaPredicted RBP17.05■□□□□ 0.32
VPS53-216ENST00000574029 LGALS4P56470 323 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 ZNF273Q14593 569 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 ATP6AP1Q15904 470 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 ZNF684Q5T5D7 378 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 LHFPL4Q7Z7J7 247 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 ZNF573Q86YE8 665 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 CALHM1Q8IU99 346 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 ZNF679Q8IYX0 411 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 Q8N2B8 174 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 OR4M1Q8NGD0 313 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 OR8B4Q96RC9 309 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 ZNF556Q9HAH1 456 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 SLC25A19Q9HC21 320 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 SERTAD4Q9NUC0 356 aa17.05■□□□□ 0.32
VPS53-216ENST00000574029 C17orf98A8MV24 154 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 J3QT63 122 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 TTRP02766 147 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 TK1P04183 234 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 FASP25445 335 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 HAAOP46952 286 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 ACTR3P61158 418 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 MFGE8Q08431 387 aaPredicted RBP17.04■□□□□ 0.32
VPS53-216ENST00000574029 ZNF829Q3KNS6 432 aaPredicted RBP17.04■□□□□ 0.32
VPS53-216ENST00000574029 TMEM236Q5W0B7 351 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 TMEM42Q69YG0 159 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 HS3ST5Q8IZT8 346 aa17.04■□□□□ 0.32
VPS53-216ENST00000574029 DYNAPQ8N1N2 210 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms