RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 NANPQ8TBE9 248 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 SYT3Q9BQG1 590 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 NELFAQ9H3P2 528 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 KCNJ16Q9NPI9 418 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 C19orf25Q9UFG5 118 aaPredicted RBP9.43□□□□□ -0.9
CCDC40-207ENST00000572253 RALGAPA1Q6GYQ0 2036 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 C7orf77A4D0Y5 90 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 FOXI3A8MTJ6 420 aaPredicted RBP9.43□□□□□ -0.9
CCDC40-207ENST00000572253 MTCP1P56278 107 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 CFHR1Q03591 330 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 SUCNR1Q9BXA5 334 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 DEFB126Q9BYW3 111 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 AMDHD2Q9Y303 409 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 V9GYS6 101 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 C2CD4DB7Z1M9 353 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 TP53I11O14683 189 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF44P15621 663 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 SNCAP37840 140 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 LFNGQ8NES3 379 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 CD300LFQ8TDQ1 290 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 EGLN1Q9GZT9 426 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 NAA60Q9H7X0 242 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 SEMA5BQ9P283 1151 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 LHX6Q9UPM6 363 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 STARD10Q9Y365 291 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 PHF3Q92576 2039 aaKnown RBP9.43□□□□□ -0.9
CCDC40-207ENST00000572253 DHRS7CA6NNS2 312 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 M0R135 149 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 ACAA1P09110 424 aaPredicted RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 UBE2V2Q15819 145 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 RPUSD3Q6P087 351 aaKnown RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 RTN4IP1Q8WWV3 396 aaPredicted RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF799Q96GE5 643 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 PIGQQ9BRB3 760 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF251Q9BRH9 671 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 PCED1AQ9H1Q7 454 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 TUBA4BQ9H853 241 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 C19orf12Q9NSK7 152 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 PLEK2Q9NYT0 353 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 MYOTQ9UBF9 498 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 MCTS1Q9ULC4 181 aaKnown RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 LOC102725191A0A1B0GVB3 256 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 UMAD1C9J7I0 102 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 C9JQL5 133 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 NPIPA2E9PIF3 369 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 NPIPA3F8WFD2 350 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 OR2J2O76002 312 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 DANCRP0C864 163 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 DUSP1P28562 367 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 SUCLG1P53597 346 aaKnown RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 GNMTQ14749 295 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 HIST3H3Q16695 136 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 FBXW12Q6X9E4 464 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 CPEB2Q7Z5Q1 589 aaKnown RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 STX12Q86Y82 276 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 LGI3Q8N145 548 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 CADM4Q8NFZ8 388 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 OR1J1Q8NGS3 322 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 TCTEX1D2Q8WW35 142 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 LYZL4Q96KX0 146 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 LMAN1LQ9HAT1 526 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 ASXL3Q9C0F0 2248 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 IGLV3-12A0A075B6K2 115 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 CBR1P16152 277 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 P2RY1P47900 373 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 FXYD4P59646 89 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 CNN3Q15417 329 aaKnown RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 WDR74Q6RFH5 385 aaPredicted RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 CCDC71LQ8N9Z2 235 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 LYPD6BQ8NI32 183 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 RNF138Q8WVD3 245 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 SPSB1Q96BD6 273 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 Q96M66 194 aa9.42□□□□□ -0.9
CCDC40-207ENST00000572253 NAA11Q9BSU3 229 aaPredicted RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 RBM24Q9BX46 236 aaKnown RBP9.42□□□□□ -0.9
CCDC40-207ENST00000572253 SPAG17Q6Q759 2223 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 ST8SIA3O43173 380 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 DTYMKP23919 212 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 HERV-K104P61576 105 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 RAB1AP62820 205 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 SPEM2Q0P670 501 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 IL13RA2Q14627 380 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 RHEBQ15382 184 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 ERGIC1Q969X5 290 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 SPACA9Q96E40 222 aaPredicted RBP9.41□□□□□ -0.9
CCDC40-207ENST00000572253 GPR173Q9NS66 373 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 IGKV1D-8A0A087WSZ0 117 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 OR5H15A6NDH6 313 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF814B7Z6K7 855 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 DIRAS3O95661 229 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 MBPP02686 304 aaPredicted RBP9.41□□□□□ -0.9
CCDC40-207ENST00000572253 GLAP06280 429 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 CHATP28329 748 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF239Q16600 458 aaKnown RBP9.41□□□□□ -0.9
CCDC40-207ENST00000572253 ETV3LQ6ZN32 361 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 HIST2H3AQ71DI3 136 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 LRRC18Q8N456 261 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 HDHD3Q9BSH5 251 aaPredicted RBP9.41□□□□□ -0.9
CCDC40-207ENST00000572253 C5orf52A6NGY3 159 aa9.41□□□□□ -0.9
CCDC40-207ENST00000572253 UBE2CO00762 179 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms