RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TCRBV16S1A1N1A0A5B0 115 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 METTL15P1P0C7V9 234 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 SPATA46Q5T0L3 261 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 JMJD6Q6NYC1 403 aaPredicted RBP13.63□□□□□ -0.23
CIITA-204ENST00000570546 TAAR6Q96RI8 345 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 SSUH2Q9Y2M2 353 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 CLEC18AA5D8T8 446 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 SLC22A20A6NK97 555 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 AQP7O14520 342 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 ZNF32P17041 273 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 C4orf17Q53FE4 359 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 SLC25A42Q86VD7 318 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 CLEC18CQ8NCF0 446 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 ZNF107Q9UII5 783 aaPredicted RBP13.63□□□□□ -0.23
CIITA-204ENST00000570546 ADAM20O43506 726 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 PDGFBP01127 241 aaPredicted RBP13.63□□□□□ -0.23
CIITA-204ENST00000570546 RBPJQ06330 500 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 C19orf57Q0VDD7 668 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 IL11RAQ14626 422 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 LYPD8Q6UX82 237 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 ZNF426Q9BUY5 554 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 PRR13Q9NZ81 148 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 C3orf85A0A1B0GTC6 90 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 RNF212Q495C1 297 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 CLEC18BQ6UXF7 455 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 TSEN54Q7Z6J9 526 aaKnown RBP13.62□□□□□ -0.23
CIITA-204ENST00000570546 ZNF429Q86V71 674 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 NUBPLQ8TB37 319 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 ELF5Q9UKW6 265 aaPredicted RBP13.62□□□□□ -0.23
CIITA-204ENST00000570546 SOCS1O15524 211 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 OR5AC1P0C628 307 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 NCR3LG1Q68D85 454 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 SCCPDHQ8NBX0 429 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 TM4SF19Q96DZ7 209 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 FBXL17Q9UF56 701 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 ANKRD34CP0C6C1 535 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 NDUFB7P17568 137 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 ZNF816Q0VGE8 651 aaPredicted RBP13.62□□□□□ -0.23
CIITA-204ENST00000570546 RHBDD2Q6NTF9 364 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 ZPBPQ9BS86 351 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 APOA2P02652 100 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 NQO2P16083 231 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 FGF7P21781 194 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 IL3RAP26951 378 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 H3F3AP84243 136 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 CD200R1LQ6Q8B3 271 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 TMPRSS7Q7RTY8 843 aa13.62□□□□□ -0.23
CIITA-204ENST00000570546 FOXS1O43638 330 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 CCDC187A0A096LP49 1063 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 UBE2L5PA0A1B0GUS4 154 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 PMS2P1A4D2B8 440 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 LINC01387J3KSC0 135 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 CRHP06850 196 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 CT45A6P0DMU7 189 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 CT45A5P0DMU8 189 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 CT45A7P0DMV0 189 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 HNF1AP20823 631 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 CT45A1Q5HYN5 189 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 RPL7L1Q6DKI1 246 aaKnown RBP13.61□□□□□ -0.23
CIITA-204ENST00000570546 CT45A3Q8NHU0 189 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 GALMQ96C23 342 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 FAM173AQ9BQD7 235 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 MRPL22Q9NWU5 206 aaKnown RBP13.61□□□□□ -0.23
CIITA-204ENST00000570546 PGA3P0DJD8 388 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 SLC25A6P12236 298 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 TMEM267Q0VDI3 215 aaPredicted RBP13.61□□□□□ -0.23
CIITA-204ENST00000570546 ENDOGQ14249 297 aaKnown RBP13.61□□□□□ -0.23
CIITA-204ENST00000570546 CISD2Q8N5K1 135 aaKnown RBP13.61□□□□□ -0.23
CIITA-204ENST00000570546 TRAF4Q9BUZ4 470 aaPredicted RBP13.61□□□□□ -0.23
CIITA-204ENST00000570546 ZNF439Q8NDP4 499 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 GHITMQ9H3K2 345 aa13.61□□□□□ -0.23
CIITA-204ENST00000570546 A0A1W2PQF6 199 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 PDCD6O75340 191 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 PRDX4Q13162 271 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 IL13RA2Q14627 380 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 UBALD2Q8IYN6 164 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 ADGRG7Q96K78 797 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 PROCRQ9UNN8 238 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 TO15178 435 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 CTSDP07339 412 aaPredicted RBP13.6□□□□□ -0.23
CIITA-204ENST00000570546 KIR3DL2P43630 455 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 RPS23P62266 143 aaKnown RBP13.6□□□□□ -0.23
CIITA-204ENST00000570546 RAC1P63000 192 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 PMP22Q01453 160 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 ZNF90Q03938 601 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 PABPC1L2AQ5JQF8 200 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 OR2T2Q6IF00 324 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 SP7Q8TDD2 431 aaPredicted RBP13.6□□□□□ -0.23
CIITA-204ENST00000570546 C4orf51C9J302 202 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 LAMP3Q9UQV4 416 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 TNS1Q9HBL0 1735 aaKnown RBP13.6□□□□□ -0.23
CIITA-204ENST00000570546 AGFG1P52594 562 aaKnown RBP13.6□□□□□ -0.23
CIITA-204ENST00000570546 GNG3P63215 75 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 TRA2AQ13595 282 aaKnown RBP eCLIP13.6□□□□□ -0.23
CIITA-204ENST00000570546 OR1C1Q15619 314 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 BTNL8Q6UX41 500 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 SLC35E1Q96K37 410 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 TAAR9Q96RI9 348 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 SOX7Q9BT81 388 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 FAM24AA6NFZ4 105 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms