RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 GLAP06280 429 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 ACAA1P09110 424 aaPredicted RBP6.86□□□□□ -1.31
VPS39-213ENST00000570062 AKAIN1P0CW23 69 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 ZNF35P13682 527 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 PTAFRP25105 342 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 ACKR3P25106 362 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 GNG2P59768 71 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 MRPS15P82914 257 aaKnown RBP6.86□□□□□ -1.31
VPS39-213ENST00000570062 HGFACQ04756 655 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 PDZK1IP1Q13113 114 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 PRDX4Q13162 271 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 KLF9Q13886 244 aaPredicted RBP6.86□□□□□ -1.31
VPS39-213ENST00000570062 ZNF260Q3ZCT1 412 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 NHLRC3Q5JS37 347 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 MBNL2Q5VZF2 373 aaKnown RBP6.86□□□□□ -1.31
VPS39-213ENST00000570062 OLFML2AQ68BL7 652 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 ELP2Q6IA86 826 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 Q6ZTK2 550 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 NRARPQ7Z6K4 114 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 LIX1LQ8IVB5 337 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 PAQR4Q8N4S7 273 aaPredicted RBP6.86□□□□□ -1.31
VPS39-213ENST00000570062 CHST4Q8NCG5 386 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 Q8NFD4 153 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 OR56B2PQ8NGI1 322 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 OR1J1Q8NGS3 322 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 OR8S1Q8NH09 359 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 OR52I2Q8NH67 350 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 GPX8Q8TED1 209 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 UBASH3BQ8TF42 649 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 CHAC2Q8WUX2 184 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 WFDC12Q8WWY7 111 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 AQP3Q92482 292 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 RADILQ96JH8 1075 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 SCGB3A2Q96PL1 93 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 SLC25A21Q9BQT8 299 aaPredicted RBP6.86□□□□□ -1.31
VPS39-213ENST00000570062 MARVELD1Q9BSK0 173 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 PAPOLGQ9BWT3 736 aaKnown RBP6.86□□□□□ -1.31
VPS39-213ENST00000570062 LPAR5Q9H1C0 372 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 ELL3Q9HB65 397 aaPredicted RBP6.86□□□□□ -1.31
VPS39-213ENST00000570062 GPR173Q9NS66 373 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 TMEM100Q9NV29 134 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 PTTG3PQ9NZH4 202 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 COQ3Q9NZJ6 369 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 JKAMPQ9P055 326 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 PLEKHA6Q9Y2H5 1048 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 FREM3P0C091 2139 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 DMXL2Q8TDJ6 3036 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 MYO18BQ8IUG5 2567 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 PQLC2LA1A4F0 135 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 FUOMA2VDF0 154 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 ZNF503-AS2A6NEH8 195 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 ZNF850A8MQ14 1090 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 DISC1C4P0D8 188 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 TRAPPC2LH3BP13 241 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 CD3GP09693 182 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 HIST1H1DP16402 221 aaKnown RBP6.85□□□□□ -1.31
VPS39-213ENST00000570062 MGMTP16455 207 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 KITLGP21583 273 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 GLRXP35754 106 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 WNT5AP41221 380 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 CA7P43166 264 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 OR3A4PP47883 348 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 RFX2P48378 723 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 ZP1P60852 638 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 DGCR2P98153 550 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 IL24Q13007 206 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 UNC119Q13432 240 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 MPV17LQ2QL34 196 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 PCGF3Q3KNV8 242 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 CDNFQ49AH0 187 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 SLC22A6Q4U2R8 563 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 FAM76BQ5HYJ3 339 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 ZNF474Q6S9Z5 364 aaPredicted RBP6.85□□□□□ -1.31
VPS39-213ENST00000570062 FIP1L1Q6UN15 594 aaKnown RBP6.85□□□□□ -1.31
VPS39-213ENST00000570062 TMEM108Q6UXF1 575 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 OSR2Q8N2R0 312 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 OR13G1Q8NGZ3 307 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 OR51F2Q8NH61 342 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 OR56B4Q8NH76 319 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 OR5P3Q8WZ94 311 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 CMBLQ96DG6 245 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 SEH1LQ96EE3 360 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 MED30Q96HR3 178 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 RNF170Q96K19 258 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 NEDD4LQ96PU5 975 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 SOX7Q9BT81 388 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 CACNG6Q9BXT2 260 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 CHST6Q9GZX3 395 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 RIMS4Q9H426 269 aaPredicted RBP6.85□□□□□ -1.31
VPS39-213ENST00000570062 NOX3Q9HBY0 568 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 LUZP4Q9P127 313 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 GLS2Q9UI32 602 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 SCP2D1Q9UJQ7 156 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 MEMO1Q9Y316 297 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 CNTRLQ7Z7A1 2325 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 ALPK2Q86TB3 2170 aa6.85□□□□□ -1.31
VPS39-213ENST00000570062 ZNF462Q96JM2 2506 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 NCKAP5O14513 1909 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 TRGV8A0A0C4DH27 118 aa6.84□□□□□ -1.31
VPS39-213ENST00000570062 IGHV1-18A0A0C4DH31 117 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms