RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	RBM14	Q96PK6	669 aa	Known RBP	9.27	□□□□□ -0.93
CLK3-222	ENST00000568232	CDRT15	Q96T59	188 aa		9.27	□□□□□ -0.93
CLK3-222	ENST00000568232	ZFP57	Q9NU63	452 aa		9.27	□□□□□ -0.93
CLK3-222	ENST00000568232	TBC1D23	Q9NUY8	699 aa		9.27	□□□□□ -0.93
CLK3-222	ENST00000568232	KCNG2	Q9UJ96	466 aa		9.27	□□□□□ -0.93
CLK3-222	ENST00000568232	MPC1	Q9Y5U8	109 aa		9.27	□□□□□ -0.93
CLK3-222	ENST00000568232	SLC1A7	O00341	560 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	OR2F2	O95006	317 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	FAM107A	O95990	144 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	SPARC	P09486	303 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	SLC6A1	P30531	599 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	ACTA2	P62736	377 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	ACTG2	P63267	376 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	ACTC1	P68032	377 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	ACTA1	P68133	377 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF260	Q3ZCT1	412 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	MINOS1	Q5TGZ0	78 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	ACP7	Q6ZNF0	438 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	PRSS45	Q7RTY3	260 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF561	Q8N587	486 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	CSNK2A3	Q8NEV1	391 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	OR5M8	Q8NGP6	311 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	OR51I2	Q9H344	312 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	BRD7	Q9NPI1	651 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	DNAJC27	Q9NZQ0	273 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	MINOS1-NBL1	R4GNA1	71 aa		9.26	□□□□□ -0.93
CLK3-222	ENST00000568232	IGHV2-26	A0A0B4J1V2	119 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	NDUFAB1	O14561	156 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	TK1	P04183	234 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF728	P0DKX0	622 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	CYLC2	Q14093	348 aa	Predicted RBP	9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	EIF2B1	Q14232	305 aa	Known RBP	9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	SLC35F1	Q5T1Q4	408 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	ERICH5	Q6P6B1	374 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	TIGD4	Q8IY51	512 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	BATF2	Q8N1L9	274 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	IFT27	Q9BW83	186 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	RABEP2	Q9H5N1	569 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	CCDC134	Q9H6E4	229 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	LYVE1	Q9Y5Y7	322 aa		9.25	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF732	B4DXR9	585 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF878	C9JN71	531 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	FXYD1	O00168	92 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF593	O00488	134 aa	Predicted RBP	9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	ARPC3	O15145	178 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	CST4	P01036	141 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF121	P58317	390 aa	Predicted RBP	9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	FGD3	Q5JSP0	725 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	CEP78	Q5JTW2	689 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	PLBD1	Q6P4A8	553 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	LCNL1	Q6ZST4	164 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	LHFPL2	Q6ZUX7	228 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	TCF23	Q7RTU1	214 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	ZDHHC23	Q8IYP9	409 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	PROKR2	Q8NFJ6	384 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	OR4P4	Q8NGL7	312 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF671	Q8TAW3	534 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	FANK1	Q8TC84	345 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	AQP3	Q92482	292 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	OR8B4	Q96RC9	309 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	TM2D3	Q9BRN9	247 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	OR52D1	Q9H346	318 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	DCLRE1B	Q9H816	532 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	INTS9	Q9NV88	658 aa	Known RBP	9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	NKIRAS1	Q9NYS0	192 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	COMMD3-BMI1	R4GMX3	469 aa		9.24	□□□□□ -0.93
CLK3-222	ENST00000568232	TRBV4-1	A0A0J9YWV2	114 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	DHRS12	A0PJE2	317 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	ERICH4	A6NGS2	130 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF682	O95780	498 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	RBP4	P02753	201 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	HCK	P08631	526 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	CFL1	P23528	166 aa	Known RBP	9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	HTR1D	P28221	377 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	HSD11B1	P28845	292 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	SLC6A6	P31641	620 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	BRS3	P32247	399 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	VEGFC	P49767	419 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	EDDM3B	P56851	147 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	IL18R1	Q13478	541 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	HAGHL	Q6PII5	290 aa	Predicted RBP	9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	BAIAP2L2	Q6UXY1	529 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	FTMT	Q8N4E7	242 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	ZNF676	Q8N7Q3	588 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	OR8J3	Q8NGG0	315 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	OR4Q3	Q8NH05	313 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	CHPT1	Q8WUD6	406 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	C7orf26	Q96N11	449 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	HIST1H2AA	Q96QV6	131 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	SH3GL1	Q99961	368 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	OR10A2	Q9H208	303 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	ANKRD19P	Q9H560	264 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	RASL12	Q9NYN1	266 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	OR14J1	Q9UGF5	321 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	HHLA2	Q9UM44	414 aa		9.23	□□□□□ -0.93
CLK3-222	ENST00000568232	SERPINE3	A8MV23	424 aa		9.22	□□□□□ -0.93
CLK3-222	ENST00000568232	MMP23A	O75900	390 aa		9.22	□□□□□ -0.93
CLK3-222	ENST00000568232	RPLP1	P05386	114 aa	Known RBP	9.22	□□□□□ -0.93
CLK3-222	ENST00000568232	H1F0	P07305	194 aa	Known RBP	9.22	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms