RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 A0A1B0GTI1 187 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 NPFFO15130 113 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 CIB2O75838 187 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 RPP14O95059 124 aaKnown RBP18.43■□□□□ 0.54
CLN3-215ENST00000565236 POLR2IP36954 125 aaKnown RBP18.43■□□□□ 0.54
CLN3-215ENST00000565236 DLX1P56177 255 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 KLRD1Q13241 179 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 SMIM21Q3B7S5 101 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 OLFML2AQ68BL7 652 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 TMEM42Q69YG0 159 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 ACP7Q6ZNF0 438 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 ASRGL1Q7L266 308 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 POC1AQ8NBT0 407 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 OR14K1Q8NGZ2 314 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 SDSLQ96GA7 329 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 CENPNQ96H22 339 aaPredicted RBP18.43■□□□□ 0.54
CLN3-215ENST00000565236 ZNF488Q96MN9 340 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 RIBC2Q9H4K1 309 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 ELL3Q9HB65 397 aaPredicted RBP18.43■□□□□ 0.54
CLN3-215ENST00000565236 OAZ3Q9UMX2 235 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 SLC22A13Q9Y226 551 aa18.43■□□□□ 0.54
CLN3-215ENST00000565236 TRBV23-1A0A0A0MS06 115 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 CLPSL1A2RUU4 121 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 BTBD17A6NE02 478 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 A6NIN4 97 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 RFPL4AA6NLU0 287 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 RFPL4AL1F8VTS6 287 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 J3QT63 122 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 SYNGR1O43759 233 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 OR2T7P0C7T2 308 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 HTR1FP30939 366 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 ATP6V1E1P36543 226 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 NCR3LG1Q68D85 454 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 OR2T27Q8NH04 317 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 TNFRSF14Q92956 283 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 POLDIP2Q9Y2S7 368 aa18.42■□□□□ 0.54
CLN3-215ENST00000565236 A0A1W2PQL4 384 aaPredicted RBP18.41■□□□□ 0.54
CLN3-215ENST00000565236 PQLC2LA1A4F0 135 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 MEIOCA2RUB1 952 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 DHRS7CA6NNS2 312 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 H0YAE9 185 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 SLC1A7O00341 560 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 PAHP00439 452 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 PGA5P0DJD9 388 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 PRDX2P32119 198 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 UBE2E1P51965 193 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 GDPGP1Q6ZNW5 385 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 SSX6Q7RTT6 188 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 FAM185AQ8N0U4 392 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 OR8J1Q8NGP2 316 aa18.41■□□□□ 0.54
CLN3-215ENST00000565236 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLN3-215ENST00000565236 METTL15A6NJ78 407 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 NOS1APO75052 506 aaPredicted RBP18.4■□□□□ 0.54
CLN3-215ENST00000565236 NXPH2O95156 264 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 APOL3O95236 402 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 ODF4Q2M2E3 257 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 Q6ZSR3 168 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 PNKDQ8N490 385 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 ZNF561Q8N587 486 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 CD177Q8N6Q3 437 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 OR10H4Q8NGA5 316 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 OR5D13Q8NGL4 314 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 WFDC12Q8WWY7 111 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 RFKQ969G6 155 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 ADI1Q9BV57 179 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 OSBPL10Q9BXB5 764 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 GABARAPL3Q9BY60 117 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 ZNRD1Q9P1U0 126 aa18.4■□□□□ 0.54
CLN3-215ENST00000565236 SF3B6Q9Y3B4 125 aaKnown RBP18.4■□□□□ 0.54
CLN3-215ENST00000565236 SAC3D1A6NKF1 404 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 CCL1P22362 96 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 SAA4P35542 130 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 SRSF4Q08170 494 aaKnown RBP18.39■□□□□ 0.53
CLN3-215ENST00000565236 ACSM1Q08AH1 577 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 TMED1Q13445 227 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 TAF9Q16594 264 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 TREML4Q6UXN2 200 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 CATSPERDQ86XM0 798 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 RBM4BQ9BQ04 359 aaKnown RBP18.39■□□□□ 0.53
CLN3-215ENST00000565236 PLEKHA1Q9HB21 404 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 SLC7A11Q9UPY5 501 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 RNF114Q9Y508 228 aa18.39■□□□□ 0.53
CLN3-215ENST00000565236 A0A1W2PPH5 198 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 ANKRD61A6NGH8 418 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 SYT7O43581 403 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 SULT1C4O75897 302 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 CDC42P60953 191 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 ANGPTL5Q86XS5 388 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 RORBQ92753 470 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 EME1Q96AY2 570 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 NRIP2Q9BQI9 281 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 C19orf12Q9NSK7 152 aa18.38■□□□□ 0.53
CLN3-215ENST00000565236 MEGF8Q7Z7M0 2845 aa18.37■□□□□ 0.53
CLN3-215ENST00000565236 FAM230AA0A1W2PPH8 454 aa18.37■□□□□ 0.53
CLN3-215ENST00000565236 H3BSH0 61 aa18.37■□□□□ 0.53
CLN3-215ENST00000565236 MPZP25189 248 aa18.37■□□□□ 0.53
CLN3-215ENST00000565236 CEBPDP49716 269 aaPredicted RBP18.37■□□□□ 0.53
CLN3-215ENST00000565236 RPL31P62899 125 aaKnown RBP18.37■□□□□ 0.53
CLN3-215ENST00000565236 BRICD5Q6PL45 260 aa18.37■□□□□ 0.53
CLN3-215ENST00000565236 BATF2Q8N1L9 274 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms