RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 LPLP06858 475 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 SLC6A1P30531 599 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 RCVRNP35243 200 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 VEGFCP49767 419 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 IDH3GP51553 393 aaPredicted RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 UCP2P55851 309 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 UNC119Q13432 240 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 TNK1Q13470 666 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 SNTB1Q13884 538 aaKnown RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 KLF9Q13886 244 aaPredicted RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 PNLIPRP3Q17RR3 467 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 CEACAM21Q3KPI0 293 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 CDNFQ49AH0 187 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 SLC22A6Q4U2R8 563 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 Q6ZTK2 550 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 SSX8Q7RTT4 187 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 ZNF554Q86TJ5 538 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 ZDHHC23Q8IYP9 409 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 WDR31Q8NA23 367 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 ZSCAN4Q8NAM6 433 aaPredicted RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 PXT1Q8NFP0 134 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 OR5A2Q8NGI9 324 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 MUCL1Q96DR8 90 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 RAB3CQ96E17 227 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 MRPS24Q96EL2 167 aaKnown RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 POM121Q96HA1 1249 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 MS4A3Q96HJ5 214 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 ZNF75AQ96N20 296 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 NKX3-1Q99801 234 aaPredicted RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 GAL3ST1Q99999 423 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 PAPOLGQ9BWT3 736 aaKnown RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 CACNG6Q9BXT2 260 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 LPAR5Q9H1C0 372 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 MMP28Q9H239 520 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 CLEC4MQ9H2X3 399 aaPredicted RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 KCNK15Q9H427 330 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 ELOVL5Q9NYP7 299 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 NPAP1Q9NZP6 1156 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 KLK11Q9UBX7 282 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 ZNF107Q9UII5 783 aaPredicted RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 NOP16Q9Y3C1 178 aaKnown RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 NUBP2Q9Y5Y2 271 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 ANKHD1Q8IWZ3 2542 aaKnown RBP7.68□□□□□ -1.18
VPS39-207ENST00000563692 APCP25054 2843 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 SPG11Q96JI7 2443 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 A0A1W2PR80 420 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 MEIOCA2RUB1 952 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 A6NNC1 897 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 INMT-MINDY4F8WBC2 141 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 H3BUI4 141 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 RAB27BO00194 218 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 GOSR1O95249 250 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 HNRNPCP07910 306 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS39-207ENST00000563692 MELTFP08582 738 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 GSTP1P09211 210 aaKnown RBP7.67□□□□□ -1.18
VPS39-207ENST00000563692 AKAIN1P0CW23 69 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 GTF2F2P13984 249 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 RAC2P15153 192 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 CPT2P23786 658 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 WNT5AP41221 380 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 TAS2R19P59542 299 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 PPP1CBP62140 327 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 BTG1P62324 171 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 RPS27AP62979 156 aaKnown RBP7.67□□□□□ -1.18
VPS39-207ENST00000563692 PDZK1IP1Q13113 114 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 PRDX4Q13162 271 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 HLXQ14774 488 aaPredicted RBP7.67□□□□□ -1.18
VPS39-207ENST00000563692 PPA1Q15181 289 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 TSC22D1Q15714 1073 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 PCGF3Q3KNV8 242 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 C3orf36Q3SXR2 165 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 ZNF260Q3ZCT1 412 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 TIMM23BQ5SRD1 257 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 FBXW12Q6X9E4 464 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 ASCL4Q6XD76 172 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 MKXQ8IYA7 352 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 CADM3Q8N126 398 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 FAM89BQ8N5H3 189 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 CELF2-AS1Q8N7Q2 184 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 TMEM229BQ8NBD8 167 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 OR56B2PQ8NGI1 322 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 OR5D18Q8NGL1 313 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 OR1J1Q8NGS3 322 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 GPX8Q8TED1 209 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 AQP3Q92482 292 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 CMBLQ96DG6 245 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 SEH1LQ96EE3 360 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 MARVELD1Q9BSK0 173 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 BCL2L14Q9BZR8 327 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 SELENOIQ9C0D9 397 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 BANF2Q9H503 90 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 HRASLSQ9HDD0 168 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 IL36GQ9NZH8 169 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 MRPL15Q9P015 296 aaKnown RBP7.67□□□□□ -1.18
VPS39-207ENST00000563692 NDRG3Q9UGV2 375 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 SPEF1Q9Y4P9 236 aa7.67□□□□□ -1.18
VPS39-207ENST00000563692 OR5B21A6NL26 309 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 A8MXE2 369 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 AKR7A2O43488 359 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 SSX4O60224 188 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms