RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 METAP1DQ6UB28 335 aaPredicted RBP13.86□□□□□ -0.19
CLK3-210ENST00000563112 FIP1L1Q6UN15 594 aaKnown RBP13.86□□□□□ -0.19
CLK3-210ENST00000563112 ACP7Q6ZNF0 438 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 C1orf122Q6ZSJ8 110 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 SSX6Q7RTT6 188 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 FAM220AQ7Z4H9 259 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 CATSPERDQ86XM0 798 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 POC1AQ8NBT0 407 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 CCDC54Q8NEL0 328 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 SDSLQ96GA7 329 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 SLC7A11Q9UPY5 501 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 MGAM2Q2M2H8 2515 aa13.86□□□□□ -0.19
CLK3-210ENST00000563112 TRBV23-1A0A0A0MS06 115 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 A0A0U1RQK1 487 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 A0A1B0GUS0 222 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 FAM181BA6NEQ2 426 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 M0R1W7 72 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 SLC1A7O00341 560 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 SYT7O43581 403 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 NXPH2O95156 264 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 CCL1P22362 96 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 KPNB1Q14974 876 aaKnown RBP13.85□□□□□ -0.19
CLK3-210ENST00000563112 Q6ZSR3 168 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 ZNRF1Q8ND25 227 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 CHIAQ9BZP6 476 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 ZNF222Q9UK12 451 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 MAB21L2Q9Y586 359 aa13.85□□□□□ -0.19
CLK3-210ENST00000563112 PQLC2LA1A4F0 135 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 ANKRD61A6NGH8 418 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 A6NIN4 97 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 RFPL4AA6NLU0 287 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 SNTNA6NMZ2 147 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 RFPL4AL1F8VTS6 287 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 EI24O14681 340 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 SPRY1O43609 319 aaPredicted RBP13.84□□□□□ -0.19
CLK3-210ENST00000563112 SYNGR1O43759 233 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 NOS1APO75052 506 aaPredicted RBP13.84□□□□□ -0.19
CLK3-210ENST00000563112 SERPINA3P01011 423 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 ALPLP05186 524 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 FBP1P09467 338 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 PGA5P0DJD9 388 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 OMGP23515 440 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 MEDAGQ5VYS4 303 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 NCR3LG1Q68D85 454 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 LDLRAD3Q86YD5 345 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 FAM185AQ8N0U4 392 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 Q8N7P7 452 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 OR4F5Q8NH21 305 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 RORBQ92753 470 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 HRASLS5Q96KN8 279 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 ZNF488Q96MN9 340 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 DPAGT1Q9H3H5 408 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 METTL8Q9H825 291 aaKnown RBP13.84□□□□□ -0.19
CLK3-210ENST00000563112 BEX1Q9HBH7 125 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 USE1Q9NZ43 259 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 GNG8Q9UK08 70 aa13.84□□□□□ -0.19
CLK3-210ENST00000563112 A0A1W2PPH5 198 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 FAM230AA0A1W2PPH8 454 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 BTBD17A6NE02 478 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 H0YAE9 185 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 RNASEK-C17orf49H0YIS7 233 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 GATBO75879 557 aaKnown RBP13.83□□□□□ -0.2
CLK3-210ENST00000563112 MDKP21741 143 aaPredicted RBP13.83□□□□□ -0.2
CLK3-210ENST00000563112 PRDX2P32119 198 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 ALDH3A2P51648 485 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 RPL15P61313 204 aaKnown RBP13.83□□□□□ -0.2
CLK3-210ENST00000563112 ACTC1P68032 377 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 ACTA1P68133 377 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 ZIK1Q3SY52 487 aaPredicted RBP13.83□□□□□ -0.2
CLK3-210ENST00000563112 PIP4P2Q8N4L2 257 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 ZNF561Q8N587 486 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 OR5D13Q8NGL4 314 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 TRMT10AQ8TBZ6 339 aaKnown RBP13.83□□□□□ -0.2
CLK3-210ENST00000563112 DYRK2Q92630 601 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 PKIBQ9C010 78 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 ELL3Q9HB65 397 aaPredicted RBP13.83□□□□□ -0.2
CLK3-210ENST00000563112 MMP24Q9Y5R2 645 aa13.83□□□□□ -0.2
CLK3-210ENST00000563112 PKD1L1Q8TDX9 2849 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 H3BNX3 289 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 H3BSH0 61 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 NPFFO15130 113 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 ENTPD6O75354 484 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 PAHP00439 452 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 UBCP0CG48 685 aaKnown RBP13.82□□□□□ -0.2
CLK3-210ENST00000563112 MPZP25189 248 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 IER3P46695 156 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 UBE2E1P51965 193 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 FUT6P51993 359 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 RAG2P55895 527 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 SNRPGP62308 76 aaKnown RBP13.82□□□□□ -0.2
CLK3-210ENST00000563112 ZNF85Q03923 595 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 TP53I3Q53FA7 332 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 SLC25A30Q5SVS4 291 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 KCTD20Q7Z5Y7 419 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 CD177Q8N6Q3 437 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 TAF15Q92804 592 aaKnown RBP eCLIP13.82□□□□□ -0.2
CLK3-210ENST00000563112 UBE2FQ969M7 185 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 C10orf35Q96D05 121 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 RNFT2Q96EX2 444 aa13.82□□□□□ -0.2
CLK3-210ENST00000563112 MYCBPQ99417 103 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 143.9 ms