RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 MRTO4Q9UKD2 239 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 KCNK6Q9Y257 313 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 PPIAL4AQ9Y536 164 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 UBIAD1Q9Y5Z9 338 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MRPS18BQ9Y676 258 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 PTPRFP10586 1907 aa2.89□□□□□ -1.95
VPS35-203ENST00000562420 MYH9P35579 1960 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 MYH14Q7Z406 1995 aaKnown RBP2.89□□□□□ -1.95
VPS35-203ENST00000562420 CAMTA1Q9Y6Y1 1673 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CROCCQ5TZA2 2017 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 TRAV26-1A0A087WT03 109 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 KIR2DL5BA0A0G2JN68 375 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 KIR2DL5BA0A0G2JPC4 375 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 KLF18A0A0U1RQI7 1052 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 IRGMA1A4Y4 181 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 NDUFAF8A1L188 74 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 TMEM150BA6NC51 233 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 RNF222A6NCQ9 220 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 LRIT2A6NDA9 550 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR5H14A6NHG9 310 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PPIAL4DF5H284 164 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 J3QR89 54 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CHEK1O14757 476 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 RAB29O14966 203 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 SCAMP2O15127 329 aaKnown RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 CTDSPLO15194 276 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 TCF21O43680 179 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 SSNA1O43805 119 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ICOSLGO75144 302 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ANXA9O76027 345 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 RCBTB2O95199 551 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 LRATO95237 230 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CFDP00746 253 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 C1QCP02747 245 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CD5P06127 495 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CRYGBP07316 175 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR4Q2P0C623 313 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CT45A8P0DMV1 189 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CT45A9P0DMV2 189 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PIPP12273 146 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 IRF2P14316 349 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 USF1P22415 310 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 IMPA1P29218 277 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 S100GP29377 79 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR10J1P30954 320 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 FGF9P31371 208 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 IL2RGP31785 369 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PTGER4P35408 488 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 NPBWR2P48146 333 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CAV2P51636 162 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CRYBA4P53673 196 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 STXBP1P61764 594 aaKnown RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 SNRPD1P62314 119 aaKnown RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 OC90Q02509 493 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 PAX2Q02962 417 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PJVKQ0ZLH3 352 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR5I1Q13606 314 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 UBE2V2Q15819 145 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNF79Q15937 498 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ANKRD55Q3KP44 614 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNF658BQ4V348 819 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 PYDC2Q56P42 97 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CT45A2Q5DJT8 189 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 SAMD13Q5VXD3 122 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 TXNRD3NBQ6F5E7 133 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR10K2Q6IF99 312 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 REEP3Q6NUK4 255 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 FAM71F2Q6NXP2 309 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 RNASEKQ6P5S7 137 aaKnown RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNF613Q6PF04 617 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 SCIMPQ6UWF3 145 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 CD164L2Q6UWJ8 174 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PAMR1Q6UXH9 720 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 FRRS1Q6ZNA5 592 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNF497Q6ZNH5 498 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNF571Q7Z3V5 609 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 GOLGA7Q7Z5G4 137 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 TMPRSS11BQ86T26 416 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 SNX29P2Q8IUI4 249 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 RIMKLAQ8IXN7 391 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 KLHDC8AQ8IYD2 350 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNF444Q8N0Y2 327 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 KIR2DL5AQ8N109 375 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZFP82Q8N141 532 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNF664Q8N3J9 261 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 GTPBP8Q8N3Z3 284 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 RYBPQ8N488 228 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 TEX26Q8N6G2 289 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNF614Q8N883 585 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 TMEM178AQ8NBL3 297 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 GPR26Q8NDV2 337 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 SLC30A7Q8NEW0 376 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 STXBP6Q8NFX7 210 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR4S1Q8NGB4 309 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR11H4Q8NGC9 324 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR4K2Q8NGD2 314 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR4K5Q8NGD3 323 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR4D6Q8NGJ1 314 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR10D4PQ8NGN7 298 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR4C3Q8NH37 302 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms